BAC Information

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BAC

Clone NameMSMg01-142K04
Chromosome13 (Build37)
Map Location 71,889,456 - 72,041,283
singlet/doubletdoublet
Overlap genenone
Upstream geneAdamts16, 8030423J24Rik, LOC627230, LOC100042360
Downstream geneIrx1, LOC100042828, LOC100042832, LOC100042836, Irx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-142K04.T7 (MSMg01no142_k04.b1)MSMg01-142K04.TJ (MSMg01no142_k04.g1)
ACCAG347196AG347197
length1,2281,226
length of high quality
(start - end)		458 (88 - 545)314 (78 - 391)
definitionCHROMAT_FILE: MSMg01no142_k04.b1 PHD_FILE: MSMg01no142_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:02:34 2005CHROMAT_FILE: MSMg01no142_k04.g1 PHD_FILE: MSMg01no142_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:02:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,889,456 - 71,889,913)(72,041,122 - 72,041,283)
sequence
CCATTCTNNNNNNGTCAGTGGGCGCTAAGACTCCTATAGGGAGAGGATCC
GCGGAATTCTTTTACGAGTAGGAGCTTTTAAAACTATGTTAATTACAGTT
GCAGTCCTGGGGGACTATCGTACAGTCTCTCACCCCTGGTAAGCATCCTA
CTAGTGATCTATATAACCATTTATTTTTCCTGTTTATTCTGAGACAGTCT
AATTTGCCAAGCTGGTCTTAAACTTGGCATCCTCTCCACACTCGTAGCTG
AGATTAAACATTTGTGCTAACCAGAGTAGAAGTATCTAACTTTAATGGAT
TCCAACTTATTTTTTTCTTTCATTGTGGTGCTTCTAATTTGTGTCTATGA
ATTTATTACCAAGCTTTCAGACATTCTCATTTTGTCCCCTAGAATGTTGC
ATTCTTTTTTGAATTCCCATGGGCACTATGAAGTCTGTGTCAGGGTCCAT
GCTCCGCATAAGGACATTCAGTTACTACAACGGATTGTGGAAAAGACATT
CTTTTCTCTATTGTATTGCCTTTGCGACTCTCAATATCAGTTTGCCGTGT
CTGTGTGGTTGGTCTTCCTAACTCTTCCTGTGTCCCATTAATCTATGTCT
AGTCTATCCCCCTATCAAGGTTGTTTCACTCTATTTCTTTGTAATTATAC
TATTGTTTATATAGTGCTTTGATCTATTCTCTCTTTTTTTTTATGTTCTT
TTTCTTTTGTATTGTTTCTTTTGATTTATTTGTATATTTTGTTTATTTTT
TCTATTATTTTTATTACTTTTTTCTTTTTTTTTTTTTTTTTTTCTTTCTT
CACTCTTATTTTTTATTTTTTTTTTTCTTTCTTTTTTTATTATTTTATTT
TTCTTCCTTTTTTTTTATTTTTTTTTTTTTTTATTTTTCTTTTTTTATCT
TTTTCTCTTTTTATTTTTTTTCTTCTTTTTTTTCTTATTCTTCTTTTTTT
TTTCCTCTTTTATCCTTTTTTTTTTTTCTTTTTTTTTTTTATTTTTCTAT
TTTTTATTCTATTACGTTTTTTTTATTTTTCTTTTTCTTATTTTTTCTTT
TTCTTTTTTTTTCTTATTTTTCTTCTTATTATTTTCCTTTCTTTTATTTT
TTACTTATCCTTTTTTTTTTATTTATTCTCTCTTTTCCTTTTATCTTTGT
TCTTTATTTCTTTCTATTATCATTTTTTTTTTCCTTTTAATTTATTTCTT
TGTCTCTCTCTTATTATACTTCCACATT

NNNGGCAATCGGAGCCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTTTAGTGCCCTGGGAAGGCAAGTGACTCCCTTGA
CTCTGCCTTTAACAAGCACACTCCCCCCTTGAGGCCAGAATGCTTTTCTG
CAGCTCTTCTGTACTGTATCCACATTGCCCTTGGACCCATGTGGCTCCAT
CCCTCCCTGGTTCATGGCTTCATATACACATTGAATAGATTCTTTACCTG
TGTCCTTTCCTCCTCAGCCTTTATCTGGGAGAGATTGGGTAGTGAAGGCA
GCATTATTAATTTCTGGTTTCTCATTTAAATTCTTTTATGTGTATTCAGA
AGAGATCTCAGGTCCTACATAGACAGCTGTCATCCACTGGGTATGTTTTT
TGTGACCCGAAGGTCATTTGTATCCTTTTAAATGCATCTTCCCACAAATA
TGCATCACTCGCACCCAGTGTATGTGCTTATTATTATTTGCTTATTTTCA
CTATGTTTTTATTTATATCTTTTATTCTTACTTATCTTTTTATGGTAATT
TCTTTTGTATATTCCCCATTTTTCTCTTTTCTATTATGCTATTTACTTAT
ATTTTCTTATCTCATTTTTTTTTTCTATATTTTATTTATATTTCCTTTCC
TTAATTTCCTCTTTTTTACCTTTTCTTTCCTTCTTATTCCTTCTTTTCTT
TCTTTTTATATTTTCTCTTTCCTTTTTATCTTTTTTTTAATTTATTCTCT
TTTTTTTTCCTCTATCTATTTTTTTTTTTTTACCCTTTTCCTATTTTAAT
ATTATTTCTTTTTCTTTTATCTCTTTATTTTTTTCTTCTAATTTCTTTAT
CTTTCTACTTTTTTTCTTCTTCTTTCTATTTTATTCCTATACTCTTTTTT
TCTTCTTTTTTTTCTTTTCTCTTTTTATCAATTTTTCTTCTTTTTTTACT
TTCTTTTTTCTCTTTTTTCTTTTTTTATTTACTCTCTCCTTTCTCTTCAT
ATATTTTCTATTTTTTATTTTTTTTTTTTTCTTCTTTTCTATTTATTACT
ATTTATATTATTTTTTTATTATCTCTTCTCCTATTCTTCATTTTTTCTCA
TATTTTCTTCCATCTTCTTTACTTACTATTTTTCTTCTATCTTCTATTTT
TTTCCTTTTTTTTTTCTTTGTCCTTTTTATTTTTTTTTTCTCTTTCTTCT
TATTCTTTTCTCCTTCTTTTTACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no142_k04.b1 MSMg01no142_k04.b1 CHROMAT_FILE:
MSMg01no142_k04.b1 PHD_FILE: MSMg01no142_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:34 2005
         (458 letters)



>mm_chr13_71889256_71890113
          Length = 858

 Score =  801 bits (414), Expect = 0.0
 Identities = 447/458 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttaattacagttgcagtcctgggggactatcgtacagtctctcacccctggtaagcatc 60
           ||||||||||||||||||||| ||||| || ||||||||||||||  | |||||||||||
Sbjct: 201 gttaattacagttgcagtccttggggattaacgtacagtctctcaggcttggtaagcatc 260

                                                                       
Query: 61  ctactagtgatctatataaccatttatttttcctgtttattctgagacagtctaatttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctactagtgatctatataaccatttatttttcctgtttattctgagacagtctaatttgc 320

                                                                       
Query: 121 caagctggtcttaaacttggcatcctctccacactcgtagctgagattaaacatttgtgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagctggtcttaaacttggcatcctctccacactcgtagctgagattaaacatttgtgc 380

                                                                       
Query: 181 taaccagagtagaagtatctaactttaatggattccaacttatttttttctttcattgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaccagagtagaagtatctaactttaatggattccaacttatttttttctttcattgtg 440

                                                                       
Query: 241 gtgcttctaatttgtgtctatgaatttattaccaagctttcagacattctcattttgtcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgcttctaatttgtgtctatgaatttattaccaagctttcagacattctcattttgtcc 500

                                                                       
Query: 301 cctagaatgttgcattcttttttgaattcccatgggcactatgaagtctgtgtcagggtc 360
           |||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 cctagaatgttgcattccattttgaattcccatgggcactatgaagtctgtgtctgggtc 560

                                                                       
Query: 361 catgctccgcataaggacattcagttactacaacggattgtggaaaagacattcttttct 420
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 catgctccgcataaggatattcagttactacaacggattgtggaaaagacattcctttct 620

                                                 
Query: 421 ctattgtattgcctttgcgactctcaatatcagtttgc 458
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctattgtattgcctttgcgactctcaatatcagtttgc 658


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no142_k04.g1 MSMg01no142_k04.g1 CHROMAT_FILE:
MSMg01no142_k04.g1 PHD_FILE: MSMg01no142_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:34 2005
         (314 letters)



>mm_chr13_72040770_72041483
          Length = 714

 Score =  313 bits (162), Expect = 7e-90
 Identities = 162/162 (100%)
 Strand = Plus / Minus

                                                                       
Query: 153 attgaatagattctttacctgtgtcctttcctcctcagcctttatctgggagagattggg 212
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 attgaatagattctttacctgtgtcctttcctcctcagcctttatctgggagagattggg 455

                                                                       
Query: 213 tagtgaaggcagcattattaatttctggtttctcatttaaattcttttatgtgtattcag 272
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tagtgaaggcagcattattaatttctggtttctcatttaaattcttttatgtgtattcag 395

                                                     
Query: 273 aagagatctcaggtcctacatagacagctgtcatccactggg 314
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aagagatctcaggtcctacatagacagctgtcatccactggg 353


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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