BAC Information

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BAC

Clone NameMSMg01-143G01
Chromosome13 (Build37)
Map Location 84,176,501 - 84,176,819
singlet/doubletsinglet
Overlap genenone
Upstream geneMef2c, LOC100043111, LOC623241, LOC432789, 2810049E08Rik, LOC100043119, LOC667081
Downstream geneLOC667101, Tmem161b, LOC666795, LOC667111, LOC382786, LOC100042841, LOC100042851
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143G01.T7 (MSMg01no143_g01.b1)MSMg01-143G01.TJ (MSMg01no143_g01.g1)
ACCAG347738AG347739
length691671
length of high quality
(start - end)
319 (79 - 397)240 (72 - 311)
definitionCHROMAT_FILE: MSMg01no143_g01.b1 PHD_FILE: MSMg01no143_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:55 2005CHROMAT_FILE: MSMg01no143_g01.g1 PHD_FILE: MSMg01no143_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGCAGAGAATGCGC
GGAATTCCATGTGATTCCTGACTCACAGGTGATTTACAATGTCAAATGCT
TCTATGGCTGCTTGAATAGTCAGCATCAAAAATAGGTTTGTTCATAAATT
AACAGAAGAAAATCAAAAAATAAAGAACAGAGACATCTCTTTCTTGCTGA
ACAGAGGCTCTACAATCAGCCAAAAGAATCATTGTATGGAAAGATAGTCC
TTGAGATTAACTACAGCCTAAATGTCAGCCTCAGGTACAAATGTCAGCCT
CAGGTACAGAAATGTCAGAATGGTTTTCTAACAAATGCCAGGTCCAACTC
CTAATACACTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCT
CCACCCCCCCCCTATATACTCTATATAACACCCAGCCAATTTTTTAACTT
AAATATATTTCCCCACTTTTTTTTTTAATAATCAATTCTAAGATAACCCT
AAATACTCTATTCGATTATACCCACATAATTTAACACCCCTTAATCCTCC
ACCCCCCCCATCTTTCTTTCTCCCACCCATTTTATATCAACATATTTAAA
CACACTTATAAAAAAAAAACCCCCCACATAAAAATAATCCCTCCCTATTA
ACCCTCCCCATTTATTTCCACTCATAATCATACCACTATTA
ACGATGATGTXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGTAAAGGTGAA
CTATAGAATTATCGCGAAATCTATTTAGCTCTGTTCCCCATTTTTAATAG
GGTTATTTGGTTCTCTGGAGTCTAATTTCTTGAGTTCTTTGTATATATTG
GATATTAACCCTCTATCTGATGAAGAATTGGTAAAGGTCTTTTCCCAACC
TGTTGGTTGCTGTTTATTTCTATTGACAGTGTTCTTTGCCTTACAGAAGC
TTTATAATTTTATGAGGTCCCATTTGTCGATTCTTGATCTAGGGCATAAG
CCATTGGTGTTCCATTCATGAATTTTTCCCTGTGCCCATGTGTTCGAGGC
TGTTCTAGTTAGAAATTCAAGTGCTATATTATATAGATAGGGAGAGAGAG
GGCAGCCTTGTCTACCCCCCGATTTTAGCGGGATTGCTTCAACTTTCTCT
CCATTTAGTTTGATGTTAGCTACTGGTTTGCTGTATATTGCTTTTACTAT
GTTTAAGTATGGGCCTTGAATTCCTGATCTCTCCAAAACTTTTAACATGA
AGGAATGTTGAATTTCGTCAATTGTTTTTTCATCATCTAATGCAATGATC
ATGTGGTTTCTTTCTTTGAGCTTTTTTTTTTTATGTACCGTATCACCTTG
ATGCATTTCCCTACACTCGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_g01.b1 MSMg01no143_g01.b1 CHROMAT_FILE:
MSMg01no143_g01.b1 PHD_FILE: MSMg01no143_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:55 2005
         (319 letters)



>mm_chr13_84176301_84177019
          Length = 719

 Score =  617 bits (319), Expect = 0.0
 Identities = 319/319 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgatttacaatgtcaaatgcttctatggctgcttgaatagtcagcatcaaaaataggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgatttacaatgtcaaatgcttctatggctgcttgaatagtcagcatcaaaaataggtt 260

                                                                       
Query: 61  tgttcataaattaacagaagaaaatcaaaaaataaagaacagagacatctctttcttgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttcataaattaacagaagaaaatcaaaaaataaagaacagagacatctctttcttgct 320

                                                                       
Query: 121 gaacagaggctctacaatcagccaaaagaatcattgtatggaaagatagtccttgagatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaacagaggctctacaatcagccaaaagaatcattgtatggaaagatagtccttgagatt 380

                                                                       
Query: 181 aactacagcctaaatgtcagcctcaggtacaaatgtcagcctcaggtacagaaatgtcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactacagcctaaatgtcagcctcaggtacaaatgtcagcctcaggtacagaaatgtcag 440

                                                                       
Query: 241 aatggttttctaacaaatgccaggtccaactcctaatacacttctctctctctctctctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatggttttctaacaaatgccaggtccaactcctaatacacttctctctctctctctctc 500

                              
Query: 301 tctctctctctctctctct 319
           |||||||||||||||||||
Sbjct: 501 tctctctctctctctctct 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 75
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)