BAC Information

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BAC

Clone NameMSMg01-143J16
Chromosome13 (Build37)
Map Location 94,010,897 - 94,011,332
singlet/doubletsinglet
Overlap genenone
Upstream geneMsh3, Dhfr, 6430502M16Rik, 4930405M20Rik, Zfyve16, LOC100039070, Spz1, Serinc5, Ppia-ps13_1124.1, Thbs4, EG624619, EG218444, Papd4
Downstream geneLOC100039163, Homer1, Jmy, EG619883, Bhmt, Bhmt2, Dmgdh, Arsb, Cycs-ps3, Lhfpl2, Scamp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143J16.T7 (MSMg01no143_j16.b1)MSMg01-143J16.TJ (MSMg01no143_j16.g1)
ACCAG347906AG347907
length713719
length of high quality
(start - end)
590 (44 - 633)441 (71 - 511)
definitionCHROMAT_FILE: MSMg01no143_j16.b1 PHD_FILE: MSMg01no143_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:12 2005CHROMAT_FILE: MSMg01no143_j16.g1 PHD_FILE: MSMg01no143_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGA
ATTCAGTAAGATTCTTGCCTATTCAGTAACATTCAGAATTGCCTCTAGTA
TTGTAAAAGAGATAGTGAAAGAAATCAGGCTTTACGATCTACTACATAGA
GTTAGAATTTCAGGGCAAGCTTAGCAACGTAAGTTTAGAATTCTTATTAT
AGTTATGTATGGCAGACTACATTACTTATTAGTAGAAAGTCCCCCACACT
ATCACTCAGAATAAAAGCCTAGTCACTCCCTTATACAGGAATTTACAATG
GTTTAGGAAGTAGATCTAAACCTGTGTTTAGAGTATTGCATTATTCATGA
GAAGGTTAGCTAGAGCAGAACTCCCTAATTAGAACCATGACTTGGGTGTG
AAAGCCCTTGCCCTACCACTGTAATGACCTCACACCTGGCTTCTATGACT
ATAGCTGACCTTAGATAGAGCTGACTTTGTCTCAGTTGTTTTATTGCCCA
GTTCCTGCCAGTCTTTGTGTTTGCATTCCTCTGTTTTGTGTAAGAGTCAT
TGAGCATCTGGTAACCTCATTTGTACCTTGCCGATGTGTCACCTAACTTC
CCTATTTTCTTCTGTATAACATGTCTGATGCTCAATTTGACAAATTACCT
TAAGATTCAGCACACTCCCTTGTGTCCTGTCTGTTTGTCACCCATTTTCG
ACAACTCCTTCGC
GATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTGACAAGATGCAGTAAGTTGCTAACCCGG
GAGGGGTGGGAGAACTGTTGTTATGAGCACTTAAGGACCAAAGTATTGTT
TCTGGCAATAAGAGCAGCATTTCAAATCTGCAATCTTATGTCTTTCACAT
CTCTTGGGGGAACAAACAGTTCTTCATTTTATGAGGAAGTCTTTTTAACA
AAACAAAACAAAGCAAAAACAAAAAACAACAAAAACAAAAACAAAACAAA
ACAAAAGTCTCCTAAAATCCAAAAGTATTTAGACCCCTGCCAAGGCCCCT
TACTCCCTTCAACAGTACTCCAGCATGATGTCTTGTGTCATTTCAATGCA
TGTATTATTCCAGCAATACAGTGTGCAATCTCTGCTTAACGAATGCCAGC
GTTATACTTTGGAGATGAGCAAGTGAATCATCCAATTGGTTTAGGAAAAG
AATTGCTAGCTTCTAATTGGAAGAGAAAGGAGGAGGAAGGAAGGATGGAG
GTAGGAGCCACAGTATTCCTTTTTCCCCACACTCCCCATCCTCCCTTTTC
CCTTCCTCCCCTCTTACCCTTTTTCCCCTCTTTTACATATCCCCCCATTT
CCCCTTTCTTCTCCTCTTATCTTTTTCCCTTTTCCCCCTCCTCCCCTCCT
TCCTCCTTCCTCCCCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_j16.g1 MSMg01no143_j16.g1 CHROMAT_FILE:
MSMg01no143_j16.g1 PHD_FILE: MSMg01no143_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:12 2005
         (441 letters)



>mm_chr13_94010697_94011537
          Length = 841

 Score =  806 bits (417), Expect = 0.0
 Identities = 433/441 (98%), Gaps = 5/441 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgacaagatgcagtaagttgctaacccgggaggggtgggagaactgttgttatgagcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgacaagatgcagtaagttgctaacccgggaggggtgggagaactgttgttatgagcac 260

                                                                       
Query: 61  ttaaggaccaaagtattgtttctggcaataagagcagcatttcaaatctgcaatcttatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaggaccaaagtattgtttctggcaataagagcagcatttcaaatctgcaatcttatg 320

                                                                       
Query: 121 tctttcacatctcttgggggaacaaacagttcttcattttatgaggaagtctttttaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctttcacatctcttgggggaacaaacagttcttcattttatgaggaagtctttttaaca 380

                                                                       
Query: 181 aaacaaaacaaagcaaaaacaaaaaacaacaaaaacaaaaacaaaacaaaacaaaagtct 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||     ||||
Sbjct: 381 aaacaaaacaaagcaaaaacaaaaaacaacaaaaacaaaaacaaaacaaaa-----gtct 435

                                                                       
Query: 241 cctaaaatccaaaagtatttagacccctgccaaggccccttactcccttcaacagtactc 300
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 436 cctaaaacccaaaagtatttagacccctgccaaggccccttactcccttcaacagtaccc 495

                                                                       
Query: 301 cagcatgatgtcttgtgtcatttcaatgcatgtattattccagcaatacagtgtgcaatc 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 496 cagcatgatgtcttgtgtcatttcaatgcatgtattattccagtaatacagtgtgcaatc 555

                                                                       
Query: 361 tctgcttaacgaatgccagcgttatactttggagatgagcaagtgaatcatccaattggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tctgcttaacgaatgccagcgttatactttggagatgagcaagtgaatcatccaattggt 615

                                
Query: 421 ttaggaaaagaattgctagct 441
           |||||||||||||||||||||
Sbjct: 616 ttaggaaaagaattgctagct 636


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)