BAC Information

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BAC

Clone NameMSMg01-143L21
Chromosome13 (Build37)
Map Location 97,442,130 - 97,497,093
singlet/doubletdoublet
Overlap genenone
Upstream geneIqgap2, F2rl2, Sv2c, LOC667582, 1200014M14Rik, 9330128J19Rik, Polk, Col4a3bp, Hmgcr
Downstream geneLOC100039456, LOC625662, 1700029F12Rik, EG620648, 5730427N09Rik, LOC100039663, Gfm2, Hexb, Enc1, LOC667676, LOC100039691, LOC100039704, EG328314, LOC100039526
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143L21.T7 (MSMg01no143_l21.b1)MSMg01-143L21.TJ (MSMg01no143_l21.g1)
ACCAG348008AG348009
length729715
length of high quality
(start - end)		367 (43 - 409)629 (71 - 699)
definitionCHROMAT_FILE: MSMg01no143_l21.b1 PHD_FILE: MSMg01no143_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:22 2005CHROMAT_FILE: MSMg01no143_l21.g1 PHD_FILE: MSMg01no143_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,442,130 - 97,442,492)(97,496,465 - 97,497,093)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTGAAGAACCGAGGTGCTCTTAACCGATGAGCCATCTCTTAAAACAC
TATATGTTCAGTAGTACTTTTCATAAACTAAAAAAGTACCTGGTTAGAGT
CTCATCGTTGTTATAAAATAGGGATTGCTCCCATTTCACACAAAGAACAT
GCTCTAAACAACTTGAATCAATTGGAAAACTAAGATTTCATTCCACATCT
AAAGCTGGGCTTCTAGAGTTACCTTCCACTGGCTTAATATAGAGCCTTTG
TTCATATCTTTATGAAACACTCCAAAAAGTTTCTTATGTCCAGGGTGTGG
TGGTTAGAGCTGGAAGTATAATAATAGACACAGTACACGTGGCACCCACC
AAAGTGAAAGTTTCCCCCCCCAACAGACTTCTTAAACGGGGCGGTGGAGG
AGGGGGAGTTCCTCTCCCTTTCTTCCTATTTCTTTTTATTTTAGTTTTCT
GTTTTGTTTTGTGTGTACTTTGTTGTTTTTGTTGGCGATTGGTTCTTTTT
AATTTGTCTTATTGTGATTGATCTAGTTTATATTATGTTTGATGTATTTT
TTCTGTTTGTTCTATTTTTTTTTTTATTTTTTGTTTGTTTGTTTTTGTGT
TGATTTTTTATATTGTGTATGTTTGTTTTATTTCTACTTTTATCACTTTT
TTTGTCTTTTTTTTTTTTTTTTTTTTTTT

CGATGAAGTGNTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCACACACAGAACCAGAGAATTTAAAAGGAG
CACCTACTGAACACTGGAATTCCACCCCATCCATCCACTCTTTCCAAACT
CTCCCCCAGCAAGCATGTGGATTGGAGAAAACATGACTTATGCTTCTGAT
GGGCGGCCTCTGCACACACGTAAAGGAGTATTGATTACAGCCAGTTTATG
CTTCCTTGTCCTATCAAGTTATTGGGTCACTCCATCTTTTCTGGGAAAAC
CCAAGGAGTGGACTGAAAGACATGTCACACTGATAAAACTGTCTGGACAA
GATCATTTCAGAACTGGGACAAAGCAGTTCTCTCCCCTCCCATCCACCTA
TTTCAATGCACACGCCAGAGTACGCATATGTGTGCACATGCCATATGCAA
AAGCTACATGTTTAAAACAATATAGTAAGTATATTAGACAATATGAGAAC
AATTGTTTTTCTGGATGATGAGGAAAAAGAAAAGAATCAAAATTTCCAAT
ATTTTTTCCCTAAGAGAATAGAGATGAGAATTATTTTCCTTTGTAGAAAC
AAGCAGATAGATTTCCATAATCTAACTCTATAATTTAATGTCTAGATTCT
TTAGAGAGGTTTTTGCATGCTGTATATTAACAGATAAAAGCCTCACTCTG
TACACCAAATTGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_l21.b1 MSMg01no143_l21.b1 CHROMAT_FILE:
MSMg01no143_l21.b1 PHD_FILE: MSMg01no143_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:22 2005
         (367 letters)



>mm_chr13_97441926_97442692
          Length = 767

 Score =  679 bits (351), Expect = 0.0
 Identities = 360/363 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctgaagaaccgaggtgctcttaaccgatgagccatctcttaaaacactatatg 64
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctgaagaactgaagtgctcttaaccgatgagccatctcttaaaacactatatg 264

                                                                       
Query: 65  ttcagtagtacttttcataaactaaaaaagtacctggttagagtctcatcgttgttataa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcagtagtacttttcataaactaaaaaagtacctggttagagtctcatcgttgttataa 324

                                                                       
Query: 125 aatagggattgctcccatttcacacaaagaacatgctctaaacaacttgaatcaattgga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatagggattgctcccatttcacacaaagaacatgctctaaacaacttgaatcaattgga 384

                                                                       
Query: 185 aaactaagatttcattccacatctaaagctgggcttctagagttaccttccactggctta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaactaagatttcattccacatctaaagctgggcttctagagttaccttccactggctta 444

                                                                       
Query: 245 atatagagcctttgttcatatctttatgaaacactccaaaaagtttcttatgtccagggt 304
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 445 atatagagcctttgttcatatctttacgaaacactccaaaaagtttcttatgtccagggt 504

                                                                       
Query: 305 gtggtggttagagctggaagtataataatagacacagtacacgtggcacccaccaaagtg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtggtggttagagctggaagtataataatagacacagtacacgtggcacccaccaaagtg 564

              
Query: 365 aaa 367
           |||
Sbjct: 565 aaa 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no143_l21.g1 MSMg01no143_l21.g1 CHROMAT_FILE:
MSMg01no143_l21.g1 PHD_FILE: MSMg01no143_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:22 2005
         (629 letters)



>mm_chr13_97496265_97497293
          Length = 1029

 Score = 1154 bits (597), Expect = 0.0
 Identities = 621/629 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacacacagaaccagagaatttaaaaggagcacctactgaacactggaattccaccccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 cacacacagaaccagagaatttaaaaggagcacctactgaacactggaattccaccccat 770

                                                                       
Query: 61  ccatccactctttccaaactctcccccagcaagcatgtggattggagaaaacatgactta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 ccatccactctttccaaactctcccccagcaagcatgtggattggagaaaacatgactta 710

                                                                       
Query: 121 tgcttctgatgggcggcctctgcacacacgtaaaggagtattgattacagccagtttatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 tgcttctgatgggcggcctctgcacacacgtaaaggagtattgattacagccagtttatg 650

                                                                       
Query: 181 cttccttgtcctatcaagttattgggtcactccatcttttctgggaaaacccaaggagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 cttccttgtcctatcaagttattgggtcactccatcttttctgggaaaacccaaggagtg 590

                                                                       
Query: 241 gactgaaagacatgtcacactgataaaactgtctggacaagatcatttcagaactgggac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 gactgaaagacatgtcacactgataaaactgtctggacaagatcatttcagaactgggac 530

                                                                       
Query: 301 aaagcagttctctcccctcccatccacctatttcaatgcacacgccagagtacgcatatg 360
           |||||||||||||||||||||||||||||||||||||||||| |  |||||||||| |||
Sbjct: 529 aaagcagttctctcccctcccatccacctatttcaatgcacatgtgagagtacgcacatg 470

                                                                       
Query: 361 tgtgcacatgccatatgcaaaagctacatgtttaaaacaatatagtaagtatattagaca 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 469 tgtgcacatgccatatgcaaaagctacatgtttaaaacaatatagtaagtatattagaaa 410

                                                                       
Query: 421 atatgagaacaattgtttttctggatgatgaggaaaaagaaaagaatcaaaatttccaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 atatgagaacaattgtttttctggatgatgaggaaaaagaaaagaatcaaaatttccaat 350

                                                                       
Query: 481 attttttccctaagagaatagagatgagaattattttcctttgtagaaacaagcagatag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 349 attttttccctaagagaatagagatgagaattattttcctttgtagaaacaggcagatag 290

                                                                       
Query: 541 atttccataatctaactctataatttaatgtctagattctttagagaggtttttgcatgc 600
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 289 atttccataatctaactctataatttaaagtctagattctttagagaggtttttgcatgc 230

                                        
Query: 601 tgtatattaacagataaaagcctcactct 629
           ||||||||| |||||||||||||||||||
Sbjct: 229 tgtatattagcagataaaagcctcactct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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