BAC Information

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BAC

Clone NameMSMg01-143M18
Chromosome13 (Build37)
Map Location 45,270,567 - 45,270,870
singlet/doubletsinglet
Overlap genenone
Upstream geneEG637868, EG667157, Jarid2, Dtnbp1, Hsp25-ps1, LOC100039502
Downstream geneLOC667204, LOC100039533, Mylip, Gmpr, Atxn1, 5033430I15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143M18.T7 (MSMg01no143_m18.b1)MSMg01-143M18.TJ (MSMg01no143_m18.g1)
ACCAG348048AG348049
length694715
length of high quality
(start - end)		372 (41 - 412)300 (70 - 369)
definitionCHROMAT_FILE: MSMg01no143_m18.b1 PHD_FILE: MSMg01no143_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:26 2005CHROMAT_FILE: MSMg01no143_m18.g1 PHD_FILE: MSMg01no143_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGTACTGTCCCCGGTATTACACTATCTCTTTGAGTAAAAGTTAGGTCACT
GCCCTTCACAGGAATTTACCATCACTAAGGAAGAAAGAAGTTTCTGACCG
TAGGAGAAACCAGAATAGATATTTAGAATTATAGTTGAGTTACACCTATA
TACAGGAATTTACAATGGTTTAGGAAGTAGATCCGGCTGTGGTTTTAGAG
TACTGCATTATTCATGAGATGGTTAGCTAGAACGGAACTCCCTAGTTAGA
ACCATGACTTGGGTGTGAAAGCCCTTGCCCTAGGAGTGAAAAGTTCTCAC
ACCTGGCTTCTAAGACTATAGCTGACCTTAGATAGGGCTGACTTTGTCTC
AGTTATTTTATTGCCCACCCCCTGCCAGTCTTTGCGTTTTCATTCCTCTG
TTCTGTGTAAGAGTCATTAAGCATCCGGTTACCTCATTTGTACCTTGTGG
GTGTGTCACCCAACTACCTTGTTGTCTTCTGCATAAAAAGTCTGATGTTC
GATTTGACAAATTACACTCAGATTCCACACAAACTCTCCTGTGTGTGTGT
CTGTCTGTCATTCATCCACGCTTTGTCCACCCGCATCGAGAGACCCCCGT
TCCACGCATACACAGGGACCCAGAAGGTCTGCAGCATTTTTACT

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAACAGTGAACATGGGAGTCAGACCCACAGTG
CTTTGGCATGTCAGCACAACAGCTTTGGTTTGTTTGTTTGTTTTGTTTTC
TGTTGTTTTTCTAAAATTAAAAACAAAGAGAATTAATGAGCCTTTTGAGT
TAGCATTTGCATTGCTATAACAAAATGCTCAAGACACTCAACTTAATTCA
CAGCATCAGGGGTCTTAGTCCATGACCACTTGGCTCTGTTGCTTTGAACC
TATGGAAAGGTAGATCTTGGCATGGAGCACTGCTTATCTCATGATGACCA
GGAAGGAGGAGAGAGGGAGGAGGCCAGAGGTCCNCNTCCCCNNNGGGGCG
TTGGAAGGCCCCACCCCCCTCATATATTATAATAGAATTATATACACTTT
GATCTCTCCACCTTCTATATACCCATCTTTCCCTCCATTATACATACAAC
CCACTTTCACATACTCTCAATTTCCATTTCCCCCATTATTTTCCCCCCCA
CCCCTATATTTTACCACTCCCCCACTTTCATCCCCGTCCCACCCAAACTA
CCCATACTACCATCTTATATAAGTTCTATTCCCAATCGTACTTTTACCTA
ATTTTCATTACTTTTTTCACCTCACCCTCCACTCATTATTTCACTCCCTA
ATATATTCGTTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_m18.g1 MSMg01no143_m18.g1 CHROMAT_FILE:
MSMg01no143_m18.g1 PHD_FILE: MSMg01no143_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:26 2005
         (300 letters)



>mm_chr13_45270367_45271070
          Length = 704

 Score =  476 bits (246), Expect = e-139
 Identities = 288/304 (94%), Gaps = 4/304 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacagtgaacatgggagtcagacccacagtgctttggcatgtcagcacaacagctttg-- 58
           ||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||  
Sbjct: 504 aacagtgaacatgagaatcagacccacagggctttggcatgtcagcacaacagctttgga 445

                                                                       
Query: 59  --gtttgtttgtttgttttgttttctgttgtttttctaaaattaaaaacaaagagaatta 116
             ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 444 ttgtttgtttgtttgttttgttttctgtcatttttctaaaattaaaaacaaagagaatta 385

                                                                       
Query: 117 atgagccttttgagttagcatttgcattgctataacaaaatgctcaagacactcaactta 176
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atgaaccttttgagttagcatttgcattgctataacaaaatgctcaagacactcaactta 325

                                                                       
Query: 177 attcacagcatcaggggtcttagtccatgaccacttggctctgttgctttgaacctatgg 236
           |||||||||||||||||||||||||  |||||||||  ||||||||||||||||||||||
Sbjct: 324 attcacagcatcaggggtcttagtctgtgaccacttcactctgttgctttgaacctatgg 265

                                                                       
Query: 237 aaaggtagatcttggcatggagcactgcttatctcatgatgaccaggaaggaggagagag 296
           ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaaggcagatcttggcatgaagcactgcttatctcatgatgaccaggaaggaggagagag 205

               
Query: 297 ggag 300
           ||||
Sbjct: 204 ggag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 704
Length adjustment: 9
Effective length of query: 291
Effective length of database: 695
Effective search space:   202245
Effective search space used:   202245
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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