Query= MSMg01no143_m22.b1 MSMg01no143_m22.b1 CHROMAT_FILE:
MSMg01no143_m22.b1 PHD_FILE: MSMg01no143_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:27 2005
(630 letters)
>mm_chr13_73696161_73697190
Length = 1030
Score = 1147 bits (593), Expect = 0.0
Identities = 617/625 (98%)
Strand = Plus / Minus
Query: 6 gaattctcaaacatgtcctgcctgaccctggccttttcagtttcccagagggaagatatc 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 gaattctcaaacatgtcctgcctgaccctggccttttcagtttcccagagggaagatatc 771
Query: 66 cacagtcctcctggttctagttccacagatcatttttgctttcccctggttcttccttca 125
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 770 cacagtcctcctggttctagttccacagatcatttttgctttcccctggctcttccttca 711
Query: 126 ctctgtgggatttgtgcatgctctcaggccttgcctctgccctaatacagacttgaccaa 185
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 710 ctctgtggaatttgtgcatgctctcaggccttgcctttgccctaatacagacttgaccaa 651
Query: 186 ggacactgtgactacctactgagcttccttatcctgatcatcttatcctatctgcttctg 245
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 650 ggacactgtgactacctactgagcttccttatcctgatcatctcatcctatctgcttctg 591
Query: 246 cctcaggtttgtataaactaacacacttccaaaggatgttgcgactcagccccagtacgg 305
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 cctcaagtttgtataaactaacacacttccaaaggatgttgcgactcagccccagtacgg 531
Query: 306 ctccacagtcgtcctgcctcccaaccttcctgccctcttcattggagacccacatacctg 365
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 atccacagtcgtcctgcctcccaaccttcctgccctcttcattggagacccacatacctg 471
Query: 366 gccagctcaccctccaggcctagtgagacattcacacctcctcccctggccccagtctca 425
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gccagctcaagctccaggcctagtgagacattcacacctcctcccctggccccagtctca 411
Query: 426 gtagaaacccacacccctccagcaggactaccacagtatctgagctttgctctactgcct 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gtagaaacccacacccctccagcaggactaccacagtatctgagctttgctctactgcct 351
Query: 486 ttggggtctatcgcctgtcccaactcagcccacatggcttccaacagctcctcatggagt 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ttggggtctatcgcctgtcccaactcagcccacatggcttccaacagctcctcatggagt 291
Query: 546 tctaccacaactacctctctaaaatgccttctgttcatctttttcaaagatggtgctgcc 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tctaccacaactacctctctaaaatgccttctgttcatctttttcaaagatggtgctgcc 231
Query: 606 cttttcatctctcaggatcatctcc 630
|||||||||||||||||||||||||
Sbjct: 230 cttttcatctctcaggatcatctcc 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no143_m22.g1 MSMg01no143_m22.g1 CHROMAT_FILE:
MSMg01no143_m22.g1 PHD_FILE: MSMg01no143_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:27 2005
(565 letters)
>mm_chr13_73573434_73574399
Length = 966
Score = 907 bits (469), Expect = 0.0
Identities = 547/591 (92%), Gaps = 30/591 (5%)
Strand = Plus / Plus
Query: 1 tcacgtgtgtctgtagtaaccaaggtcagctactaggccataggaggtctcttctagaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 tcacgtgtgtctgtagtaaccaaggtcagctactaggccataggaggtctcttctagaaa 231
Query: 61 atcctgcccttcaatgttctgtttgctgaggacatgtagcatgggccatgtatgtccatc 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 atcctgcccttcaattttctgtttgctgaggacatgtagcatgggccatgtatgtccatc 291
Query: 121 ctgtgatgtgaccctgaaggacataacactctctgtgccctctagactcaggtcagccaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ctgtgatgtgaccctgaaggacataacactctctgtgccctctagactcaggtcagccaa 351
Query: 181 ctctgatggctttgtcatctatctgaactcccaatcctgtccaggttggctttcagagtg 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 352 ctctgatggctttgtcatctatctgaactcccaatcctgtccaggttgtctttcagagtg 411
Query: 241 gcccatagtgaggccaaaagcaggttcactgctccctcttgaagagtcatccaaggctca 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gcccatagtgagaccaaaagcaggttcactgctccctcttgaagagtcatccaaggctca 471
Query: 301 gttatatgggagtgcctgggttttgtaagtgtccttgtggcgcccactggaaaaatga-- 358
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 472 gttatatgggagtgcctgggttttgtaagtgtccttgtggggtgaactggaaaaatgaat 531
Query: 359 -------------------gcttcagagtcccctc--------aagtgcagtgcaatgcc 391
||| |||||||||| | |||||||||||||||||
Sbjct: 532 tctctgataggaacgaacagctccagagtccccccccccccccaagtgcagtgcaatgcc 591
Query: 392 aag-ccaccttcatcctgctctatggcctctgccctgaagacctgtgggtctctatgagc 450
||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 592 aagaccgccttcatcctgctctatggcctctgccctgaagacctgtgggtctctgtgagc 651
Query: 451 agggctcatctattcagggaaccagtgtccacctgcatacactgtagggctcaaaaccca 510
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 agggctcgtctattcagggaaccagtgtccacctgcatacactgtagggctcaaaaccca 711
Query: 511 ggccttatggatcagaggccactgtcacttctggaactaggctttgtctga 561
||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 712 ggccttagggatcagaggccactgtcacttctagaactaggctttgtctga 762
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 966
Length adjustment: 10
Effective length of query: 555
Effective length of database: 956
Effective search space: 530580
Effective search space used: 530580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
