BAC Information

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BAC

Clone NameMSMg01-143N15
Chromosome13 (Build37)
Map Location 81,483,664 - 81,483,812
singlet/doubletsinglet
Overlap geneGpr98
Upstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984
Downstream geneLysmd3, Polr3g, 2900024O10Rik, Cetn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143N15.T7 (MSMg01no143_n15.b1)MSMg01-143N15.TJ (MSMg01no143_n15.g1)
ACCAG348087AG348088
length714789
length of high quality
(start - end)		649 (43 - 691)156 (74 - 229)
definitionCHROMAT_FILE: MSMg01no143_n15.b1 PHD_FILE: MSMg01no143_n15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:30 2005CHROMAT_FILE: MSMg01no143_n15.g1 PHD_FILE: MSMg01no143_n15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCAACTGACGAATATCAAATGGCTGAGAAGCACCTGAAAAAATGTTCA
ACATCCTTAATCATCAGGGAAATGCAAACCAAAGCAACCCTGACATTCCA
CCTCACACCAGTCAGAATGGATAAAATAAAAAAACTCAGATGACAACAGA
TGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGCTAGTGGTT
TTGCAAGCTGGTATAACCACTCTGGAAATCAGTTTTGAGGTACCTCAGAA
AATTAGACATTGTACTACCTGAAGATCCAGCAACACCACTCCTGGGCATA
TACCCAGAAGATGCTCCAACATGTAATAAGGACACCTGCTCTACCATGTT
CATAGCAGCCTCATTTATAATAGCCAGAAGCTGGAAAGAACTCAGATGTC
CCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAGTGGTA
CACAGCTATTAAAAACAATGAATTTATGAAGTTCTTAGACAAATGGATGT
ATCTGGAGGATATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACACA
CATGATATGCACTCACTAAAAAAGTGAATATTAGTCCAGAAACTCAGAAT
ACCCAAGATATAATTTGTAAAACACTTGAAACTCAAGAAGAAGGGAGACC
AAAGTGTGGATTCG

CGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGAACATAAATTTCAAAATTTAAGAAC
TCTGATTACCTTTATTTGTTTTATAATTTCCCTCAAATGGGAACATGTCT
AGTTAGTCTCTGTGTCTAAGGTCAGCCTTGTGTTGTGTTGGTGTATATGT
CTGTGTGTGTGTGTGTGTGTGTATGTATGNATAANNAANANNAAATATTT
AATTATATATATAATAAAAAAATAAAATAATATAAATTATTAATTTATTA
ATTTTAAAAAAAAAATTTATTTTTTTTTAANAAATATATTAATCAAAATA
ATATTTATATAATAATAATAACACCCTCTTTATTTTAATTATTTTTTTTT
ATTCCAATAATTTACCTTATAACCCCCCCCCTTTGTTTTTCATTTTATTT
GATACTGTATTTTTTTCTATCCCTTTTTAATTACCTTCTTCACTTTCGAC
TTTTTTTTCTTTCCTCCTTTCCTCTCTATCCTCTTATTATATGTGCGTTT
ATATTTATTTTGAGAATTTTCAAATACTCGAACTAAATCTAATGCCCGAT
TAAATGTTATATTTGTATCTTTCTCAATTATATTCTATATATTTAAAACT
AACAACTGACCATATATTACCTCTATATACCATATATATTTCTCACGCTA
TATTCCCTCCTTTCTTTATCAACACTCTCTTATATTCTTTCTTTCATAAT
CTCTTATATCAATTAGTGTGTATTATATCTGTTATTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_n15.g1 MSMg01no143_n15.g1 CHROMAT_FILE:
MSMg01no143_n15.g1 PHD_FILE: MSMg01no143_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:30 2005
         (156 letters)



>mm_chr13_81483464_81484019
          Length = 556

 Score =  281 bits (145), Expect = 2e-80
 Identities = 148/149 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaacataaatttcaaaatttaagaactctgattacctttatttgttttataatttccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaacataaatttcaaaatttaagaactctgattacctttatttgttttataatttccct 260

                                                                       
Query: 61  caaatgggaacatgtctagttagtctctgtgtctaaggtcagccttgtgttgtgttggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaatgggaacatgtctagttagtctctgtgtctaaggtcagccttgtgttgtgttggtg 320

                                        
Query: 121 tatatgtctgtgtgtgtgtgtgtgtgtgt 149
           ||||||||| |||||||||||||||||||
Sbjct: 321 tatatgtctctgtgtgtgtgtgtgtgtgt 349


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 156
Length of database: 556
Length adjustment: 8
Effective length of query: 148
Effective length of database: 548
Effective search space:    81104
Effective search space used:    81104
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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