Query= MSMg01no143_o14.b1 MSMg01no143_o14.b1 CHROMAT_FILE:
MSMg01no143_o14.b1 PHD_FILE: MSMg01no143_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:35 2005
(628 letters)
>mm_chr13_41494940_41495967
Length = 1028
Score = 1120 bits (579), Expect = 0.0
Identities = 612/623 (98%)
Strand = Plus / Plus
Query: 5 gaattcagtgaatgcccggagaatgtgctaaaggtgagattgagagagatggcttaccac 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtgaatgtagggagaatgtgctaaaggtgagattgagagagatggcttaccac 264
Query: 65 atagctatgaagtactcagtgtgacataagacacccacatgaaaccttggtgtggcacat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atagctatgaagtactcagtgtgacataagacacccacatgaaaccttggtgtggcacat 324
Query: 125 ataatcccagagctggggagacagggataggaggatccctgggtctagctgagtcagtga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ataatcccagagctggggagacagggataggaggatccctgggtctagctgagtcagtga 384
Query: 185 actccatgttcagtgagagactgtgcttaaatactaagatggagagtaattaaggagcgc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 actccatgttcagtgagagactgtgcttaaatactaagatggagagtaattaaggagcgc 444
Query: 245 acattcaatgttgaaccctggtctttgcatgcacacatctgcacctatgttaatatgaat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acattcaatgttgaaccctggtctttgcatgcacacatctgcacctatgttaatatgaat 504
Query: 305 gcacacagacacagatacacacacacacacacacatacacacaagaagtttggggctgga 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 505 gcacacagacacagatacacacacacacacacacatacacacaagaagtttgggactgga 564
Query: 365 atgtcagcgccaatgttatatagagttgacctttgatctctgcaatggctcttctacaga 424
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atgtcagtggtaatgttatatagagttgacctttgatctctgcaatggctcttctacaga 624
Query: 425 gcttgtactatcacaattctgatctagactccagtcaggcaagcaataggtcagcaacgt 484
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 625 gcttgtactattacaagtctgatctagactccagtcaggcaagcaataggtcagcaatgt 684
Query: 485 aaacagctccattttacccttggatactgcaggctcttcggagagcaactgggaatttgg 544
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 685 aaacagctccattttacccttggatactgcagcctcttcggagagcaactgggaatttgg 744
Query: 545 ggaaaaggagcaagagggaatcatggttccctttagtttgttctgtgttctctcctattc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ggaaaaggagcaagagggaatcatggttccctttagtttgttctgtgttctctcctattc 804
Query: 605 tcagagagaaatccagtttgtga 627
|||||||||||||||||||||||
Sbjct: 805 tcagagagaaatccagtttgtga 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no143_o14.g1 MSMg01no143_o14.g1 CHROMAT_FILE:
MSMg01no143_o14.g1 PHD_FILE: MSMg01no143_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:35 2005
(506 letters)
>mm_chr13_41641192_41642096
Length = 905
Score = 870 bits (450), Expect = 0.0
Identities = 492/506 (97%), Gaps = 1/506 (0%)
Strand = Plus / Minus
Query: 1 ctttttgggagtagaactgcgtggatctggtgagtcacttgtgaggcagtgcatgtgaga 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 705 ctttttgggagtagaactgcgtggatctggtgaatcacttgtgaggcagtgcatgtgagg 646
Query: 61 aatggggcaggttcttgaagagaagagaggaaaagggcagtctgggtttgcagagagtaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 aatggggcaggttcttgaagagaagagaggaaaagggcagtctgggtttgcagagagtaa 586
Query: 121 ttcctcggagttgcagcttacagcagctgctcgcggggttgggaaatgtggctcagtaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 585 ttcctcggagttgcagcttacagcagctgctcgcggggttgggaaatgtggctcagtgga 526
Query: 181 gcaaggcaggtgaattctcactaccaaccacaatccactgttggcttcacagttaatacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gcaaggcaggtgaattctcactaccaaccacaatccactgttggcttcacagttaatacc 466
Query: 241 ctgtttcatggtgcttggtttcatgtctaaaataggaacacactccctagcattctatgg 300
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ctggctcatggtgcttggtttcatgtctaaaataggaacacactccctagcattctatgg 406
Query: 301 tgctcagtagctaagaagagtgctctccagaacttaagatgcccacctctttctgcctgc 360
||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct: 405 tgctcagtagctaagaagagtgctctccagaacttaagatg-caaattctttctgcctgc 347
Query: 361 ttttgtatcgcagttgaagggcagttatagataggttggcgtaaggagcaaacatgttct 420
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 346 ttttgtatcgcagttgaagggcagttataggtcggttggcgtaaggagcaaacatgttct 287
Query: 421 ggaacaaacatgatctgaagcaatcgctataagagatttctctgtactcccaaggaggcg 480
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 286 ggaacaaacatgatctgaagcaatcgctataagagatttctccgtactcccaaggaggtg 227
Query: 481 cctgtttgttcaagagaagatgtcag 506
||||||||||||||| ||||||||||
Sbjct: 226 cctgtttgttcaagaaaagatgtcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 905
Length adjustment: 10
Effective length of query: 496
Effective length of database: 895
Effective search space: 443920
Effective search space used: 443920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
