BAC Information

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BAC

Clone NameMSMg01-144A08
Chromosome13 (Build37)
Map Location 98,834,441 - 98,834,698
singlet/doubletsinglet
Overlap geneRgnef
Upstream geneEG620648, 5730427N09Rik, LOC100039663, Gfm2, Hexb, Enc1, LOC667676, LOC100039691, LOC100039704, EG328314, LOC100039526, LOC100039740
Downstream geneLOC667703, Utp15, Ankra2, EG667718, Btf3, Foxd1, LOC100039827, LOC100039665, LOC100039854, LOC218501, Tmem174, Tmem171, LOC669675, Fcho2, Tnpo1, EG432798, LOC100039771, 1700024P04Rik, LOC100039967
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144A08.T7 (MSMg01no144_a08.b1)MSMg01-144A08.TJ (MSMg01no144_a08.g1)
ACCAG348203AG348204
length779788
length of high quality
(start - end)
262 (46 - 307)198 (76 - 273)
definitionCHROMAT_FILE: MSMg01no144_a08.b1 PHD_FILE: MSMg01no144_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:44 2005CHROMAT_FILE: MSMg01no144_a08.g1 PHD_FILE: MSMg01no144_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAGATCCGCGG
AATTCATTAAACTATACATAAATAGCCAAGTTTTATGAAATGTAAAATAT
ATTTCAACAAAGCTTTTATTTTAAAATGAACCATGATAGCCATATTTATC
CCATGCTTATGAGGTACCTGTGATAAGGATGCTACTATGCCTGACGCATG
ACCCAACTGCTCAAGGTCACTCAGGAATCAGGTAGAGCATCAAGAACTGA
GACTCCAGGCTGGAAAGATGGCTCAGCGGTTAAGAGCACTGACTGCTCTT
CCCGAGGTCCTGAGTTCAATTCCCACGCTTCCACATCGGTGCCTCACACC
CATCTGTTACGCTATCCGATGCCCCTTTTCTGGTGTCGCCTCCGACTTTA
TCGCTTACTGTTGTGCCTCCCTTCTACCCCCCCCCCTCCANNCTTTTATA
TTTATTTTTCTCTTACCTCTCTGTTTATTTTCTTTCCCCTTCCCCCTCCA
AATCCTTATCCCCCCTTCTTTTTTCCCTCTCTTTTCCCCTCTCACCGCAC
TACCTTTTCTCCCCTCTCTTCTGTCTTCCCCTTTCCCCCCTTTTTTCCTT
TTCCTTCCCCCTATCTTTCCCTTCTTTCCTTTTTCCTCTACTTTTCCTTC
CCCCTTTTTTCTTTCCCCTCCTTTTCCCCTCTTTTAGATCATATCTCCCT
CTCTTAATTCCGCCTTTTTTTTTCCTTTTCTTCCTCCCCCTTCTCCCCTC
TTCCCCCCCCCCATCAGCAAAAATTTATC
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGAAAGCTTGCAGGCCAGCCAGCC
TAGTCTGTGTAGCAGTCAGCCGGAGATGGTCTCAAACAAGGGAGAAGGCA
AGGACCAACAGCCATGGTTATCCTCTGATGTCTGTGTGTACATCCTGGGA
TATGTATGTCTGTACTCATACCCAGAAGCAAGTGCATGCATACATGTACT
CACACACACTCAGAGGAAGACAGACAGACAGACAGACAGACACAGACAAA
GAGAGAGACTGACAGACAGACAGACAGATAGACAGACCGACTGACAGACA
CTCACACACACACATATACACACATTCACTCACTCATACCTTTTTCTTAG
ATGAGACAAGTTTGTTTTCCCCCCCCCCCTCTTCCCTTTATTCCAGTATT
CGCCGATTTTTCTCACGCCCCTTCCTCTTGTCCTTGTATGCCTTTTTATA
TCAATCATAGGCCTATTTATTTCCTTCCCCCTTTTTTCCCCTTCTGTTCG
CCTTTTTTCTTCCTTTTTCTTTCCCTTTTATACCTTTTTTTCCTTTCTTC
CCCCTTTCTCTTTTCCCTCTTTCCCCCCCTTTTTCCTTTTTTTTCTCTTC
TCCCACTCTCTCTCCCTATTTTCCTTTACCTTTTTCCCCTTTTTTTCCTC
TTTTTCCCCCTTTTCTCTTCCTTTTTTTCTCTCCCTTTTTCTCTTCCTCC
CCCTTCTTTTTTTTTCTTTTTTCCCCTCCTCTTCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_a08.b1 MSMg01no144_a08.b1 CHROMAT_FILE:
MSMg01no144_a08.b1 PHD_FILE: MSMg01no144_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:44 2005
         (262 letters)



>mm_chr13_98834237_98834898
          Length = 662

 Score =  445 bits (230), Expect = e-129
 Identities = 251/258 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattaaactatacataaatagccaagttttatgaaatgtaaaatatatttcaaca 64
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 205 gaattcattaaactatatataaatagccaagttttatgaaatgtaaaatatatttctaca 264

                                                                       
Query: 65  aagcttttattttaaaatgaaccatgatagccatatttatcccatgcttatgaggtacct 124
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagctttgattttaaaatgaaccatgatagccatatttatcccatgcttatgaggtacct 324

                                                                       
Query: 125 gtgataaggatgctactatgcctgacgcatgacccaactgctcaaggtcactcaggaatc 184
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 325 gtgataaggatgttactatgcctgacgcatgacccaactgctcaaggtcactcaggaagc 384

                                                                       
Query: 185 aggtagagcatcaagaactgagactccaggctggaaagatggctcagcggttaagagcac 244
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggaagagcatcaagaactgagactccaggctggaaagatggctcagcggttaagagcac 444

                             
Query: 245 tgactgctcttcccgagg 262
           ||||||||||||| ||||
Sbjct: 445 tgactgctcttccagagg 462


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 662
Length adjustment: 9
Effective length of query: 253
Effective length of database: 653
Effective search space:   165209
Effective search space used:   165209
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)