BAC Information

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BAC

Clone NameMSMg01-146J05
Chromosome13 (Build37)
Map Location 67,400,321 - 67,400,830
singlet/doubletsinglet
Overlap geneZfp457
Upstream geneLOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458
Downstream geneA230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222, AA414992, LOC666238, EG666245
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146J05.T7 (MSMg01no146_j05.b1)MSMg01-146J05.TJ (MSMg01no146_j05.g1)
ACCAG350075AG350076
length1,2141,208
length of high quality
(start - end)		639 (90 - 728)716 (91 - 806)
definitionCHROMAT_FILE: MSMg01no146_j05.b1 PHD_FILE: MSMg01no146_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:30 2005CHROMAT_FILE: MSMg01no146_j05.g1 PHD_FILE: MSMg01no146_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGTTTTTTTTNNNNACAATGGGCGCTATAXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTGTCTTCATTGCTGCACTATTAAACTTTAGTTTTTCTC
TTTATTGAATTGCAGTTTCCTTTCCTGGATTGTGTCCCCATTTCCATCCT
TCTGATGTTTTTGGTTTCTTAGGCATCACTCAAGCACTCGTTCTCCTTAC
GTTCACTGTGTTCTATGGCACTGAGATGCTTCTTCTTCCTGCCTTGTAAG
AACGTTTTGTAGTCTAGGATGACGTTTATGACTCTTCTTCTAAAGTCTCT
GTCCTAATGTTCATCTAAGCAATGTGTAGTGGCAAATGTTTCTATCTTGA
GAATATTGAGGCGAAATCCCAGCATGATCTTTTCTATTGTTTATTTTTTT
CTATGATATCTGGCCATAAGGTTTTAGGAGAATATGCAGGCATGTTCTAG
TCCATCTACAGCAAAATTTAATGTTGTTTTATTAGGTTTGCATGTCTGAC
TTCATAAAGGCGTCCTTTATTCTTTTCAGTTATCAAACAGCTGTATATTC
TTTTAACACACATTGTTTTTCTTTATATTCCCTTTTTCTTTGATTTTTAT
TTCATCTTAATGTGGTTGGAAGTGAACTTCTTTAAATAATATGACGTTTA
ACTAAGTCATAAAGAAAATAATTCAGGGAATTGTACATGTGATTAATTTG
TGACACTCTTCAGTGATGATCCAAGATTCCATATGGTCATTTGCAACAAC
ATGTATGATGTTAGATTTGTGAGCATGAACACAGAGAAAGAATGTCAGGA
ATAAGTTGGGAGCCTTAGAGGAGAAGGTATATCAGTACACACTAAGAGTG
TTTCAGATTATTGTTATGAGGGTTGTGTTAATATTATAACTTTGTTTTTT
TTTTGTTCTTTTTCTACTTTTTCTTTTTTTTATCTATTATCTTTTGATTT
ATTTTTCCTCTTCTTATTTTTTTTTTTTCTTGTTTAATTTATCTTTCTTT
CTATTTTTCATTCTTTTATTTCTATTTTATTCTTTTTTTAATATATTATA
TTATTTATTTTATTCTCCTTATATCTTTTTCTACTTTTCTTTTTTTCTTT
TTTCCTCTTTTTTCTTTTATTTTCTTATTTATTTATTTCTTCTTTTTTCA
TTTTTCTTTCTTCTCTTATCTTTACCACTCTTTTTTTTTTTTCTTCTTTT
CTTTTTCTTTTTTT

NCCGAAAATTTTTNNTTAGCATGGAGCCTGGGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAACCTGAGGAATACCGA
ATGGCAGAGAAGCTCCTGACCAAATGTTTAACATCCTCACCCATCAGGGA
AATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGG
CTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAA
ATAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACT
CTGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGGACATAGTACTACCGG
AGGATCCCGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACT
GGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAAT
AGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGACGAATGGATAC
AGAAAATGTGGTACATTTACACAATTGAGTACTACTCAGCTATTAAAAAG
AATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCAT
CCTGAGTGAGGTAACCCAATCACAGAAGAAGTCACATGATATGTACTCAC
TGATAAGTGGATATTAGCCCAGAAACTTAGTATACCCGAGATATAAGATA
CAATTTGCAAAACACATGAAACTGAAGAACGAAGACCAAAGTGTGGACAT
TTTGCCCCTTCTCAAATTGGAAACAATCACCCATGGAAGGAGTTACAGAG
ACAAAGTTTGGAGCTGAGACAAAAGGATGGACCATCTAGAGACTGCCATA
TCCAGGGATCCATCCCATAATTAGCCTCCAATCGATGACACCATTGTATA
CACTAGCAAGCGTTTGCTGAAAGGATCCTGATATAGCTGTCACTTGTGAG
ACTAGGCCCGGGCCTAGCAAACCATAAATGGATGCTCACAGTCAGCTGTT
GGATGGATCACAGGGCCCCCATGGAGGAGCTAGAGAAAGTTTCCAGGGAG
CTAATGAAAACTGTGACCCTGGTAGTTGCAACATATTTTAACTTACCAAT
TCCCCGGAAACTCTTTTTCCACTTGCTATTGTACAAAAAAAGGCCTATTC
GCCCCTTTGTGAAAAAATTCCTTCTCCCTGGGACATCTTTTTTTTCCCCT
ACTGTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_j05.b1 MSMg01no146_j05.b1 CHROMAT_FILE:
MSMg01no146_j05.b1 PHD_FILE: MSMg01no146_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:30 2005
         (639 letters)



>mm_chr13_67399793_67400830
          Length = 1038

 Score =  942 bits (487), Expect = 0.0
 Identities = 505/511 (98%), Gaps = 1/511 (0%)
 Strand = Plus / Minus

                                                                        
Query: 129  gcactgagatgcttcttcttcctgccttgtaagaacgttttgtagtctaggatgacgttt 188
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1038 gcactgagatgcttcttcttcctgccttgtaagaacgttttgtagtctaggatgatgttt 979

                                                                        
Query: 189  atgactcttcttctaaagtctctgtcctaatgttcatctaagcaatgtgtagtggcaaat 248
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 978  atgactcttcttctaaagtctctgtcctaatgttcatctaagcaatgtgtagtggcaaat 919

                                                                        
Query: 249  gtttctatcttgagaatattgaggcgaaatcccagcatgatcttttctattgtttatttt 308
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918  gtttctatcttgagaatattgaggcgaaatcccagcatgatcttttctattgtttatttt 859

                                                                        
Query: 309  tttctatgatatctggccataaggttttaggagaatatgcaggcatgttctagtccatct 368
            ||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 858  tttctatgagagctggccataaggttttaggagaatatgcaggcatgttctagcccatct 799

                                                                        
Query: 369  acagcaaaatttaatgttgttttattaggtttgcatgtctgacttcataaaggcgtcctt 428
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798  acagcaaaatttaatgttgttttattaggtttgcatgtctgacttcataaaggcgtcctt 739

                                                                        
Query: 429  tattcttttcagttatcaaacagctgtatattcttttaacacacattgtttttctttata 488
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738  tattcttttcagttatcaaacagctgtatattcttttaacacacattgtttttctttata 679

                                                                        
Query: 489  ttccctttttctttgatttttatttcatcttaatgtggttggaagtgaacttctttaaat 548
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678  ttccctttttctttgatttttatttcatcttaatgtggttggaagtgaacttctttaaat 619

                                                                        
Query: 549  aatatgacgtttaactaagtcataaagaaaataattcagggaattgtacatgtgattaat 608
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 618  aatatgacgtttaactaagtcataaagaaaataa-tcagggaattgtacatgtgattaat 560

                                           
Query: 609  ttgtgacactcttcagtgatgatccaagatt 639
            ||||||||||||||||||||||| |||||||
Sbjct: 559  ttgtgacactcttcagtgatgatacaagatt 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1038
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1028
Effective search space:   646612
Effective search space used:   646612
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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