BAC Information

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BAC

Clone NameMSMg01-146M18
Chromosome13 (Build37)
Map Location 80,394,286 - 80,394,894
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666925, LOC382780, EG666933
Downstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146M18.T7 (MSMg01no146_m18.b1)MSMg01-146M18.TJ (MSMg01no146_m18.g1)
ACCAG350238AG350239
length1,2461,251
length of high quality
(start - end)
610 (143 - 752)541 (94 - 634)
definitionCHROMAT_FILE: MSMg01no146_m18.b1 PHD_FILE: MSMg01no146_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:00 2005CHROMAT_FILE: MSMg01no146_m18.g1 PHD_FILE: MSMg01no146_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:00 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NCGATTCTTTNNNNNTGCAATGGGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCTTGACTCCCTACCACAATTAAAACTCCAAATCAGGA
GAGGCCTTTATATGTTATCCCTTCAACAAAGGGGATCCCGCGAAGCCTTA
GGAGAAGAGTGTTATTTTTATGTAAACCACTCATGCATAGTTAGGGAATC
CATAGCCCTACTCAGGAAAAGATTGCAGGAAAGGAAAATAGAAGAGTAAG
AGTCTCAAAAGTGGTATGTCTCTTTTAACTGCTCTCCTTGGTTGACCACC
TTAGTTTCAGGCATAACTATTCTCCTCATCATATTACTATTAATTCTGAC
ATGTGGACCTTATGCTTTAGTTAATCCTTTAGTCAGGTTTGTCAAAGAAC
ACATTTATTTTGTTCAACTAATGATTCTTAGACAACAATATCAGCTTATA
GGAACATCTCAAGGATTCAAGATGGGTCCTTCTTTTATGGGGAATGAAAG
GAATGAATTGGCCTTAGCCAGGGTGACTCCCTGACAGGTAGAAAACTAGG
AATTTAGGAAACCAGATCTGAGTTTTTACATTCCAGAACTGGACAAGTCA
TTTACTTGAACAACCATAGGCTTATGCAACCATGATCCATTCCCACCTGC
AAAAGGATAGTTAAAAGAGCTTGTGGCTAAGAGGTGAAGAACCACCCCCC
TTGACATGAAGCAAGAATAGTAAAATATGCTTGAAGCACGACCCTAACCA
ATTACACCAACTCCCAGAGATAGAACATGAATTCTAGATATGGATCACCC
ACTCCTCCCTAATATTCCCCCCTTTGACTTTAAAACTGAATCTGTAAATT
CATTTGGCGATCCTTCCATCCTGATGGAATTGGTTCCCTGCCTGCAGGAA
TTTGTTCAATAAATACTCCTGGGCTTTTGGCAATTACTTGAGTCTGGGGC
CATGAATCCTCGTGGATTCTTGGAATGTTAATTTAGTAATGCTCATTGTT
TTTTTCCCCCATTTTTTGGTTCCAAATATATTTTGGCTTTCCCTTTTTAA
TTTTGTCCTGCCTTAAATTTTTCTTTATTAAATTGCTCTTGTGACCCAAA
AAAAATCCTCTGTTTTTGTGTCAATTTCCTCTCTCCCCTTCTATTCTTAT
TAAGTTTTCCTCTCTTCTCTCTTTATTTATTTTCTTTTTTACTTTTCTCC
TTTTCCTATTTATCTTTCCTTTTTTATTTATTTTCTTTTTCTCTTT
NCCCCGATCTTTTTTTTAAGAGGTGAGCCTGGGGXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCTTAGAGAACCTAGATCA
CTGGAGGGACAGGATACAGTCCCATACAGTAATGACAGGCCCCCCTAGAG
ATAACCAGATGGCGAGAGGCAAGAACAAGAACATAAGCAACAGAAAAGAA
GGTTACTTGGCAGCCACAAAGTGAGTTCTAGGACAGCCAGGGCTATACAG
AGAAACGTTGTCTCAGAAAAAAAAAGGGGGGGGGGAGAAGAAGAAGAAGA
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG
AAGGTGGTTACTCGGCATCATCAAAAGCCAGTTCTCCCACCATAGCATGT
CCGGAATACCCCATTTTTCCACAATAACAATATTAGAATTTAAAATCACT
TATAATAATGACGATGATGATGGTAGAAGACTTGTAAATAACTCCCTTAA
TGAAAAATATGAGAACACAGATAAGCAGGTAGAAGCCTTATGGAAATATA
AAAATCCCTTAAAGAAATATAGGAAAACACAACCAAATAGGTGAAGGAAT
TAAACAAAACAATCCAGGATTTAAAAATGGAAATAGAAATAATAAAGAAA
TCAAAAAAGGGATACAATCCTGTAGATGAAAAACATAGGAAAGAGATCAG
GAGTCATAGATTAAGCATCACCCACAGATTACTTGAGATTAGAGAGAATA
TCTCTGGTGTCTAAGATACTACTGAAAACCCTGACTAATTTGTCTTAGAT
TATACAAATTGTATATATCTCCCTAACTGAATCTTTCAGTATATTCTGGA
TATTATTGAAAATACTAATCTAATGTTTCCATGTTTAACACGTTTACTAA
TCTGGTATTTCCTGAAAAATTGTCCAATTTTCTTTATCTATTCCTTTTGT
TCAATGTCTTTTTCTAATTTTCATTATTCTTCTACCCTACTTTCTTTCCT
CCTATGATATATTTTTTTCTCCTTATTTTTTTTCTTTTCCTTTATATATT
CCTCTACTCTTGCTCTTTTTTGTTAAATCTTTACTATCTTCTATGTGTTC
GTTTTCTCTTTTTTCCTCTCCTTCTTTCTCTTATTTATATTTTCATTTAT
TTTCATTTTCATTTCTCTATTACTCCTCTTCATTTTTTTCTCTTTCTTCT
CTTAGTCTTCTTTTCTTCCTTTATTTGACTCTTTTTTTTTTTACTTTCTT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_m18.b1 MSMg01no146_m18.b1 CHROMAT_FILE:
MSMg01no146_m18.b1 PHD_FILE: MSMg01no146_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:00 2005
         (610 letters)



>mm_chr13_80394162_80395170
          Length = 1009

 Score =  998 bits (516), Expect = 0.0
 Identities = 587/612 (95%), Gaps = 5/612 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagccttaggagaagagtgttatttttatgtaaaccactcatgcatagttagggaatcca 60
           |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 733 aagccttaggggaagagtgttatttttatgcaaaccactcatgcatagttagggaatcca 674

                                                                       
Query: 61  tagccctactcaggaaaagattgcaggaaaggaaaatagaagagtaagagtctcaaaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tagccctactcaggaaaagattgcaggaaaggaaaatagaagagtaagagtctcaaaagt 614

                                                                       
Query: 121 ggtatgtctcttttaactgctctccttggttgaccaccttagtttcaggcataactattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 613 ggtatgtctcttttaactgctctccttggttgaccaccttagtttcaggaataactattc 554

                                                                       
Query: 181 tcctcatcatattactattaattctgacatgtggaccttatgctttagttaatcctttag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 553 tcctcatcatattactattaattctgacatgtggaccttatgctttagttaatgctttag 494

                                                                       
Query: 241 tcaggtttgtcaaagaacacatttattttgttcaactaatgattcttagacaacaatatc 300
           ||||||| |||||| |||||||||||  ||||||||||||||||| ||||||||||||||
Sbjct: 493 tcaggtt-gtcaaaaaacacatttatactgttcaactaatgattcctagacaacaatatc 435

                                                                       
Query: 301 agcttataggaacatctcaaggattcaagatgggtccttcttttatggggaatgaaagga 360
           ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 434 agcttataggaacatctcaaggattcaagataggtccttcttctatggggaatgaaagga 375

                                                                       
Query: 361 atgaattggccttagccagggtgactccctgacaggtagaaaactaggaatttaggaaac 420
           |||||||||||||||||||||| ||||| ||||||| ||||||||||||||| |||||||
Sbjct: 374 atgaattggccttagccagggtaactccatgacaggcagaaaactaggaattcaggaaac 315

                                                                       
Query: 421 cagatctgagtttttacattccagaactggacaagtcatttacttgaacaaccataggct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cagatctgagtttttacattccagaactggacaagtcatttacttgaacaaccataggct 255

                                                                       
Query: 481 tatgcaacca--tgatccattcccacctgcaaaaggatagttaaaagagcttgtggctaa 538
           |||||||  |  ||||||||||| |  |||||||||||||||||||||||||||||||||
Sbjct: 254 tatgcaa--aagtgatccattcctagttgcaaaaggatagttaaaagagcttgtggctaa 197

                                                                       
Query: 539 gaggtgaagaaccaccccccttgacatgaagcaagaatagtaaaatatgcttgaagcacg 598
           |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 196 gaggtgaagaactaccccccttgacatgaagcaagaatagtcaaatatgcttgaagcaag 137

                       
Query: 599 accctaaccaat 610
           ||||||||||||
Sbjct: 136 accctaaccaat 125


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1009
Length adjustment: 10
Effective length of query: 600
Effective length of database: 999
Effective search space:   599400
Effective search space used:   599400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)