Query= MSMg01no147_f04.b1 MSMg01no147_f04.b1 CHROMAT_FILE:
MSMg01no147_f04.b1 PHD_FILE: MSMg01no147_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:53 2005
(660 letters)
>mm_chr13_5427196_5428255
Length = 1060
Score = 1164 bits (602), Expect = 0.0
Identities = 642/656 (97%), Gaps = 4/656 (0%)
Strand = Plus / Plus
Query: 8 ttctttcttgaatttttcttggggtattatatcacagcaataagaacagtaacaaagaaa 67
||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 206 ttctttcttgattttttcttggggtattgtatcacagcaacaagaacagtaacaaagaaa 265
Query: 68 gctgtgtatcacactacaataacttgagaaggtaagtatacatgttgcttctataggcta 127
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 266 gctgtgtatcacactacaataacttgagaaggtaagtataaatgttgcttctataggcta 325
Query: 128 gtggcttctttatgccacatgtttctccatgaaacaa-aaggcttgctgcttataggaca 186
||||||| |||||||||| |||||||||||||| ||| ||| ||||||||||||||||||
Sbjct: 326 gtggcttttttatgccacttgtttctccatgaaccaacaag-cttgctgcttataggaca 384
Query: 187 agtctcaactacctagttgctaatgctttccagtctgtgtcgcttgctttggaatttctt 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agtctcaactacctagttgctaatgctttccagtctgtgtcgcttgctttggaatttctt 444
Query: 247 a--gtgtgtgtttttaactcttgtaaatatgacaaagaggaaatgctgcaatggcaaatg 304
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaagtgtgtgtttttaactcttgtaaatatgacaaagaggaaatgctgcaatggcaaatg 504
Query: 305 gctatttctctatttcacacacgtgccatggtgagcctagtttgatagaactcattccaa 364
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gctatttctgtatttcacacacgtgccatggtgagcctagtttgatagaactcattccaa 564
Query: 365 caaatgaattttcaatgtttaatctagaaactgcagccattgtaaagcctgtcaacactg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caaatgaattttcaatgtttaatctagaaactgcagccattgtaaagcctgtcaacactg 624
Query: 425 caaaaattaagaagagtacatggctagacatatagtatacaagtgtatagtgatgagcaa 484
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 625 caaaaattaagaagagtacatggctagacatatagtatgcaagtgtatagtgatgagcaa 684
Query: 485 tggccaagcagatagtatataatattttaaaattaatctcagacacttaattctgatagt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tggccaagcagatagtatataatattttaaaattaatctcagacacttaattctgatagt 744
Query: 545 atttcggccatgtttctacaattgaataatttttataaaggatgaaaatattttcactat 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atttcggccatgtttctacaattgaataatttttataaaggatgaaaatattttcactat 804
Query: 605 ttgtgtttatactattttccatgctaataacaataagatattcacagaagctagta 660
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 805 ttgtgtttatactattttccatgctaataacaataagatattcatagaagctagta 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no147_f04.g1 MSMg01no147_f04.g1 CHROMAT_FILE:
MSMg01no147_f04.g1 PHD_FILE: MSMg01no147_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:53 2005
(643 letters)
>mm_chr13_5496405_5497447
Length = 1043
Score = 1218 bits (630), Expect = 0.0
Identities = 639/642 (99%)
Strand = Plus / Minus
Query: 1 acagtgatccaagttctgggattaaaggtgtgtacaccctggaatccgcttggcatcggt 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 842 acagtgatccaagttctgggattaaaggtgtgtacaccctggaatctgcttggcatcggt 783
Query: 61 ggatgttttcattgctatagtttcactttcttctgaaggtgccttgggcttagattgaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 ggatgttttcattgctatagtttcactttcttctgaaggtgccttgggcttagattgaga 723
Query: 121 acagggtaggaaattgttttgcatgttcctgaatactttgttgagcattctttttatctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 acagggtaggaaattgttttgcatgttcctgaatactttgttgagcattctttttatctg 663
Query: 181 agctgcagtgaaactcctctctatgctctggtttataccagattgtctgctccctacttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 agctgcagtgaaactcctctctatgctctggtttataccagattgtctgctccctacttg 603
Query: 241 ttcccatttgtttgttgaattggcagaggaattgggaactctccatggtcctgttctatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ttcccatttgtttgttgaattggcagaggaattgggaactctccatggtcctgttctatc 543
Query: 301 ctttgtgcttgatagattttgtgtctcagagtaagtttctgaatcattctgtccattgtt 360
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 542 ctttgtgcttgatagattttgtgtcttagagtaggtttctgaatcattctgtccattgtt 483
Query: 361 cttatggtgttctgaatagccttgtatcaataaaaagtgctgtatgagatgaaaattcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 cttatggtgttctgaatagccttgtatcaataaaaagtgctgtatgagatgaaaattcct 423
Query: 421 gcttttgtggcagaaataggagaaagtgagtagaccagagcaggattttcaatgactcta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gcttttgtggcagaaataggagaaagtgagtagaccagagcaggattttcaatgactcta 363
Query: 481 tcagtgctagattattttattttttgcatgcaattcatatgaggaatttatatcattctt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tcagtgctagattattttattttttgcatgcaattcatatgaggaatttatatcattctt 303
Query: 541 ctctccatttttccaattccacctgcatattctcatattcatagaatcttgtttttaaat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ctctccatttttccaattccacctgcatattctcatattcatagaatcttgtttttaaat 243
Query: 601 aacattgtttcaaaaatataaattcataaatacagactgcca 642
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 aacattgtttcaaaaatataaattcataaatacagactgcca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
