BAC Information

Click to search

BAC

Clone NameMSMg01-147G24
Chromosome13 (Build37)
Map Location 9,297,388 - 9,297,946
singlet/doubletsinglet
Overlap geneDip2c
Upstream geneAdarb2, EG666941, Wdr37, LOC100039632, Idi1, EG382723, LOC100039655, Idi2, Gtpbp4, LOC667721, Larp5, EG667727, LOC100039719
Downstream geneLOC666986, Zmynd11, Chrm3, LOC100039604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147G24.T7 (MSMg01no147_g24.b1)MSMg01-147G24.TJ (MSMg01no147_g24.g1)
ACCAG350708AG350709
length728721
length of high quality
(start - end)
523 (72 - 594)559 (62 - 620)
definitionCHROMAT_FILE: MSMg01no147_g24.b1 PHD_FILE: MSMg01no147_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:02 2005CHROMAT_FILE: MSMg01no147_g24.g1 PHD_FILE: MSMg01no147_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAACAATCCGCGGAATT
CATCGTTTTTAATAGCTGAGTAGTACGTACTCCATTGTGTAAATGTACCA
CAGTTTCTGTATCCATTCCTCTCTTGAGGGACATCTGGGTTCTTTCCAGC
TCCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCC
TTATTACATGTTGGAGCATCTTCTGGATATATGCCCAGGAGTGGTAAAGC
TGGGTCCTCAGGTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACTG
ATTTCCAGAGTGGTTATACCAGCTTGCAATCCCACCAGCAATGGAGGAGT
GTTCCTCTTTCTCCACATCCTTGCCAGCATCTGCTGTCACCTGAGTTTTG
GATTTTAGCCATTCCCACTGGAGTGAGGTGGAATCTCAGGGTTGTTTTGA
TTTGCATTTCCCTGATGATTAAGGATGTTGATCATTTTTTCAGGTGCTTC
TCAGCCATTCGATATTCCTCAGTTGAAAATTCTTTGTTTAGCTCTGTACT
CCATTTTTAATAGGGTTATTTGATTTTCTGGAGTCTAACTTCTTGCACTT
AGAACATGAAAGTGAGAAATCTAGATTGCAAGTGTTGGAAGAGTGGTTTG
TTAAGCGTCAAGGCCAACTGCGATGAAAGCTTGCTAAACTGTTACCTGTG
CTTATCTGCCTCATCTGTGTGGTTCTGN
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTTTGGAAAGTGACTAGAGAAGAAGGGGATCTGAGGTC
CTTGCTGGGGGCTTCCTCAGTGTAAGAACCTGACACTATGGTTCCTGTGA
GTCAGCAGGCACAGGAGGGAGAGGTGGACAAGGGTGACGATCCAGTCGAC
TTGGGTCTTGTCTTCCTCTGGTAAAGATGTAGATTTTACAAAACTTTTGT
GTAGAAAAAACAACCAGCCAGCCAACCAACCACCACCACCAACAACAACC
ACAACCAAAAAACCTCCCAGAAGAACCCAGGGAGAACCTAGAGAAAACCC
AAGAGGTCCCAAACACTACAAACTGTTGTTCTTTTGAAACTTTGTCATTT
GTGACCCGCCTAGTCATTTAATGTTTTGTTACACTGCAGTCTTATTAAAT
GTTAACTATTATTTTCTATGCTAAGTAATATCATTATAACCCTCTTGTTA
GGTGACAAAATTATTTACTTCTCTTTTTTTTTCAGGCGAGTAAGAGCAAT
CCAAAACAGTTTGTAGTACTAATAATACTGGATATAATTACTGAAATGAA
TAATGAAATAGTGGTCATCAATTAATAACAATAAAACCCAGTTAAAGAGT
GTCTATATTTTGTACATCCTTAAAAAAAAAAAAGCCCACAAAACCCACCG
TACACATAAAACACTTATTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_g24.g1 MSMg01no147_g24.g1 CHROMAT_FILE:
MSMg01no147_g24.g1 PHD_FILE: MSMg01no147_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:02 2005
         (559 letters)



>mm_chr13_9297188_9298146
          Length = 959

 Score = 1004 bits (519), Expect = 0.0
 Identities = 549/559 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttttggaaagtgactagagaagaaggggatctgaggtccttgctgggggcttcctcagt 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 tttttggaaagtgactagagaagaaggggatctgaggtccctgctgggggcttcctcagt 260

                                                                       
Query: 61  gtaagaacctgacactatggttcctgtgagtcagcaggcacaggagggagaggtggacaa 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 gtaagaacctgacactatggttcctgtgcgtcagcaggcacaggagggagaggtggacaa 320

                                                                       
Query: 121 gggtgacgatccagtcgacttgggtcttgtcttcctctggtaaagatgtagattttacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggtgacgatccagtcgacttgggtcttgtcttcctctggtaaagatgtagattttacaa 380

                                                                       
Query: 181 aacttttgtgtagaaaaaacaaccagccagccaaccaaccaccaccaccaacaacaacca 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 381 aacttttgtgtagaaaaaacaaccagccaaccaaccaaccaccaccaccaataacaacca 440

                                                                       
Query: 241 caaccaaaaaacctcccagaagaacccagggagaacctagagaaaacccaagaggtccca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaccaaaaaacctcccagaagaacccagggagaacctagagaaaacccaagaggtccca 500

                                                                       
Query: 301 aacactacaaactgttgttcttttgaaactttgtcatttgtgacccgcctagtcatttaa 360
           ||||||||||||||||||||||||||||||||||||||||||||  |  |||||||||||
Sbjct: 501 aacactacaaactgttgttcttttgaaactttgtcatttgtgacatgtttagtcatttaa 560

                                                                       
Query: 361 tgttttgttacactgcagtcttattaaatgttaactattattttctatgctaagtaatat 420
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 tgttttgttacactgcagtcttattaaatgttaactattattttccatgctaagtaatat 620

                                                                       
Query: 421 cattataaccctcttgttaggtgacaaaattatttacttctctttttttttcaggcgagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 621 cattataaccctcttgttaggtgacaaaattatttacttctctttttttttcaggtgagt 680

                                                                       
Query: 481 aagagcaatccaaaacagtttgtagtactaataatactggatataattactgaaatgaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagagcaatccaaaacagtttgtagtactaataatactggatataattactgaaatgaat 740

                              
Query: 541 aatgaaatagtggtcatca 559
           |||||||||||||||||||
Sbjct: 741 aatgaaatagtggtcatca 759


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)