BAC Information

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BAC

Clone NameMSMg01-147I12
Chromosome13 (Build37)
Map Location 81,906,140 - 81,906,639
singlet/doubletsinglet
Overlap genenone
Upstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98, Lysmd3, Polr3g, 2900024O10Rik
Downstream geneCetn3, LOC238756
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147I12.T7 (MSMg01no147_i12.b1)MSMg01-147I12.TJ (MSMg01no147_i12.g1)
ACCAG350780AG350781
length708704
length of high quality
(start - end)
511 (46 - 556)430 (67 - 496)
definitionCHROMAT_FILE: MSMg01no147_i12.b1 PHD_FILE: MSMg01no147_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:08 2005CHROMAT_FILE: MSMg01no147_i12.g1 PHD_FILE: MSMg01no147_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATACCCATATACTCAATAATGCACAAAATGAAACAGTACCTTGC
AGTGGGAGAAGGGACTCAGAAACAGGAGATCATAATTCCCACCTGCAGGG
GGCAGCAGCGCCTCGACTGTGAGGGTTCAGAGCCTATGCGCTGGATCTTG
CTTCTTTAAGAAAAGCCCCACACTGAAAGTCTTTGTTCTTTGTTCCTGAT
TTTATAATGTTAGCAACAAAGCCAAGTATTTTAAAAATACCCTTTTAAGG
TCTTCTTTGGTGGTAGGTGGCCTCTTAGGCTATGATCACTTCTTCAGTCC
AACAGTCTTTCGAACGGTGTCTAATTCTCCCTAGGCATCACTAAACCAGC
TTTGTGATCCACAAAACTAACTTGACAGGGCCACCTGTCAATCAGATTAT
CAGATTGCCTCTCCCTTTCTTCCTCCCTTCCCCCTCCTGTCTCCTTTCCC
TTATGAAACCTCATAAGATAAATACATTAAATTACATTACATGCAACACA
CAAGGGGCGGGGGCGGGGGCGGAGGCAGGGGCGGGAACCACTGCAAAACA
AAAAGGATTAGCTGTATTTCCTGGAGGCCTGCTCCTGTTGAGCTTCCCAG
TGCCCTCTGAACCAGTGTGGCCCACTTATTTTTGCGTCCTTTGCGCCCTT
TCCCTCGC
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTAGCTCTGTACCCCATTTTCTCATAGGGGATT
CTTATGAAAGACTAGGAGGAATAGTTACAGATCCCAAAGGGAATATGAAC
TCTACAGGAAGACCAACAAAATCAACTAACAGAGACTGAACCACCAACCA
AAGAACATACACTGGCTGCACCTAGGCCTCCCCAAACATACCTAGCTAAT
GTCCAGCTTGATCTTCATGTAAGCTCCAAACAAAAGGAGCAGGGCTTTCC
CAAAAGCTGCTGCCTGTACGTGGGATATGTTCTTCTAGCTAGGCTGCCTT
GTCTGACCTCAGTGGGAGAGGAAGCACCTAGCTTCATAGAGACTTGATGT
GCCGCGGTCAGGGGATAAAGAGGAGGCCCCACCCACTCAGATGAGACAGA
CAGGGGAGATGGGGGAAGGACTGTGGGAGGTGATGATCAGGAAGGGGATA
ATGACCACGACGCACAGTGAACCACCAACGCCACAATAACTAATAATACT
AATTTTTAAAGAGACTGCCTCTAGTTAGCCTGAACTGACAACAGCTACAC
CACAGTTCACAAATATCCCTGACGTCCGATTCACCACCATTCAAATTCCC
CCCCTGCCTCTCGCCAACTATTAGTCTCCTCCCCTCCTCCCTTATTCCCT
CTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_i12.b1 MSMg01no147_i12.b1 CHROMAT_FILE:
MSMg01no147_i12.b1 PHD_FILE: MSMg01no147_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:08 2005
         (511 letters)



>mm_chr13_81905929_81906839
          Length = 911

 Score =  928 bits (480), Expect = 0.0
 Identities = 495/500 (99%)
 Strand = Plus / Plus

                                                                       
Query: 12  atacccatatactcaataatgcacaaaatgaaacagtaccttgcagtgggagaagggact 71
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atacccatatactccataatgcacaaaatgaaacagtaccttgcagtgggagaagggact 271

                                                                       
Query: 72  cagaaacaggagatcataattcccacctgcagggggcagcagcgcctcgactgtgagggt 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 cagaaacaggagatcataattcccacctgcagggggcagcagcgcctcgactgtgagggt 331

                                                                       
Query: 132 tcagagcctatgcgctggatcttgcttctttaagaaaagccccacactgaaagtctttgt 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tcagagcctatgcgctggatcttgcttctttaagaaaagccccacactgaaagtctttgt 391

                                                                       
Query: 192 tctttgttcctgattttataatgttagcaacaaagccaagtattttaaaaataccctttt 251
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 392 tctttgttcctgattttataatgttagcaacaaagccaagtattttaaaaatacccattt 451

                                                                       
Query: 252 aaggtcttctttggtggtaggtggcctcttaggctatgatcacttcttcagtccaacagt 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 aaggtcttctttggtggtaggtggcctcttaggctatgatcacttcttcagtccaacagt 511

                                                                       
Query: 312 ctttcgaacggtgtctaattctccctaggcatcactaaaccagctttgtgatccacaaaa 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 512 ctttcgaacggtgtctaattctccctaggcatcactaaaccagctttgtgatccagaaaa 571

                                                                       
Query: 372 ctaacttgacagggccacctgtcaatcagattatcagattgcctctccctttcttcctcc 431
           |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 572 ctaacttgacagggtcacctgtcaatcaaattatcagattgcctctccctttcttcctcc 631

                                                                       
Query: 432 cttccccctcctgtctcctttcccttatgaaacctcataagataaatacattaaattaca 491
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 cttccccctcctgtctcctttcccttatgaaacctcataagataaatacattaaattaca 691

                               
Query: 492 ttacatgcaacacacaaggg 511
           ||||||||||||||||||||
Sbjct: 692 ttacatgcaacacacaaggg 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)