BAC Information

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BAC

Clone NameMSMg01-147M23
Chromosome13 (Build37)
Map Location 39,139,124 - 39,139,624
singlet/doubletsinglet
Overlap genenone
Upstream geneRiok1, Dsp, 6530403A03Rik, Bmp6, Txndc5, Muted, Eef1e1, LOC621102, Slc35b3
Downstream geneEG666867, LOC100041779, LOC382747, A230103O09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147M23.T7 (MSMg01no147_m23.b1)MSMg01-147M23.TJ (MSMg01no147_m23.g1)
ACCAG350990AG350991
length702690
length of high quality
(start - end)
461 (89 - 549)501 (81 - 581)
definitionCHROMAT_FILE: MSMg01no147_m23.b1 PHD_FILE: MSMg01no147_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:30 2005CHROMAT_FILE: MSMg01no147_m23.g1 PHD_FILE: MSMg01no147_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTCCCNNCTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCA
GAGCATCCGCGGAATTCTTTGTTCATCTCTGACCCCCATTTTTAAATGGG
GTTATTTGATTTTCTGAAGTCCACCTTCTTGAGCTCTTTATATATGTTGG
ATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCT
GTTGGTGGTCTTTTTGTCTTATTGACGGTGTCCTTTGCCTTGCAGAAACT
TTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAG
CCATTGCTGTTCTGTTCAGGAACCTTTCCCCTGTGCCTTTATCTTCAAGG
CTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTG
AAGTTCCTTGATCCATTTAGATTTGACCTTACCACAAGGAGATAAGTATG
GATCAATTCACATTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAA
TTGTTGAAAATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTC
GAAGATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTC
TATTCCATTGGGCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTG
ATCACAATTGCTCTGTAGTAAAGCTTTAGGTCAGGCCTGGGGATTCCACC
AA
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCCCGCAACTCTTGATGCATATTTTTTGTTAATTGAAG
ATTTTCTTGAAAACTATGCAAGACACCAGGCAAATAGTACATTTATGTAT
GTAATAGAAATGGTTGTAATATATCATTAAGACACTTCAGGGCATGTTTT
ATTGGTTCATTAATACAGTACATGCCTAAGGTGTTTTCAACCACTCGGGG
CCTATATTAATGGACCAATAAAATGTACCCGGGAGTGCCTTAATGCTACC
CTAATATGGCTAAGTTTAAATTATTTTTTTCAGGCTTATCTTTTAAAAAA
ATCATTTTTTCCTACTTGGAAAGATAAATTCTTTCACAGAGGGAAAGGCA
TTTGTGGTGACGGAAGAAGAAGAAGCAAGATAATAAGAATCTTTTTGTTT
TATCAATTTTCTAAAAATGGTCTTGGTATTTCTAATCTTTGGCATTCTAC
TTCCTATGTCTTCTGCACCTTCTGTGAAATCAATGATCTTGTGCCTGGGG
GCAGGGAAATAAGAACGGTTTCTTTCTGGGAGCAGAAGGCCAAGTACCAG
CAGGTGTCACATCTGCCATGCGCTGCCTTTGCCACCATACTTTAAGAATA
AACTTTGTCTACCTGTGGACAACTTGTCTCTCTGTACCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_m23.g1 MSMg01no147_m23.g1 CHROMAT_FILE:
MSMg01no147_m23.g1 PHD_FILE: MSMg01no147_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:30 2005
         (501 letters)



>mm_chr13_39138924_39139824
          Length = 901

 Score =  946 bits (489), Expect = 0.0
 Identities = 498/501 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atattttttgttaattgaagattttcttgaaaactatgcaagacaccaggcaaatagtac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 atattttttgttaattgaagattttcttgaaaactatgcaagacaccaggcaaatagtac 642

                                                                       
Query: 61  atttatgtatgtaatagaaatggttgtaatatatcattaagacacttcagggcatgtttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 atttatgtatgtaatagaaatggttgtaatatatcattaagacacttcagggcatgtttt 582

                                                                       
Query: 121 attggttcattaatacagtacatgcctaaggtgttttcaaccactcggggcctatattaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 attggttcattaatacagtacatgcctaaggtgttttcaaccactcggggcctatattaa 522

                                                                       
Query: 181 tggaccaataaaatgtacccgggagtgccttaatgctaccctaatatggctaagtttaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tggaccaataaaatgtacccgggagtgccttaatgctaccctaatatggctaagtttaaa 462

                                                                       
Query: 241 ttatttttttcaggcttatcttttaaaaaaatcattttttcctacttggaaagataaatt 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ttaattttttcaggcttatcttttaaaaaaatcattttttcctacttggaaagataaatt 402

                                                                       
Query: 301 ctttcacagagggaaaggcatttgtggtgacggaagaagaagaagcaagataataagaat 360
           |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 401 ctttcacagagggaaaggcatttgtggtgatggaaaaagaagaagcaagataataagaat 342

                                                                       
Query: 361 ctttttgttttatcaattttctaaaaatggtcttggtatttctaatctttggcattctac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ctttttgttttatcaattttctaaaaatggtcttggtatttctaatctttggcattctac 282

                                                                       
Query: 421 ttcctatgtcttctgcaccttctgtgaaatcaatgatcttgtgcctgggggcagggaaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ttcctatgtcttctgcaccttctgtgaaatcaatgatcttgtgcctgggggcagggaaat 222

                                
Query: 481 aagaacggtttctttctggga 501
           |||||||||||||||||||||
Sbjct: 221 aagaacggtttctttctggga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)