Query= MSMg01no148_c14.b1 MSMg01no148_c14.b1 CHROMAT_FILE:
MSMg01no148_c14.b1 PHD_FILE: MSMg01no148_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:58 2005
(526 letters)
>mm_chr13_114009385_114010312
Length = 928
Score = 810 bits (419), Expect = 0.0
Identities = 503/543 (92%), Gaps = 21/543 (3%)
Strand = Plus / Plus
Query: 5 gaattcacatatcctaccttgtcctgtagtcttccggctaattctggt--------ctcg 56
|||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 186 gaattcacatatcctaagttgtcctgtagtcttccggctaattctggtggaagggtctcg 245
Query: 57 gaactctttggattcgtgggaagacacagagaacctcagcagtgcaagcaataacgttag 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gaactctttggattcgtgggaagacacagagaacctcagcagtgcaagcaataacgttag 305
Query: 117 gatagcgctgatatcagcctggctacact-----------gtcgattcttataagaggca 165
|| |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 306 gacagcgctgatatcagtctggctacacttattcttataagtcgattcttataagaggca 365
Query: 166 gtttggcagggcttcttgtgtctactctgttttattcttccttttagatggccatttaga 225
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gtttggcaggacttcttgtgtctactctgttttattcttccttttagatggccatttaga 425
Query: 226 tgaaggtgggggatccacaaatctaactcaaccccacacagctatctcctttttagttac 285
||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||
Sbjct: 426 tgaaggtgggggatccacacatctaacccaacagcacacagctatctcctttttagttac 485
Query: 286 cctaatcatttacctaatattccacttaaaaagggtgtgttacatagagaaccattcctc 345
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cctaatcatttacctagcatcccacttaaaaagggtgtgttacatagagaaccattcctc 545
Query: 346 ctcataaggtagacccgattttaaaacccgcacagcttctttgtgtttggttggtttact 405
|||||||||||||||||||||||||| | | | ||||||||| |||||| ||||||||||
Sbjct: 546 ctcataaggtagacccgattttaaaatctgtagagcttctttttgtttgtttggtttact 605
Query: 406 atttttaaa--gagggtgaaaactgtccaagtaacatgaagcacagagttacgactctca 463
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 atttttaaaaagagggtgaaaactgtccaagtaacatgaagcacagagttacgactctca 665
Query: 464 aaagctagcatctctggaaccttctggagccttcgatagaccacatgttgcaggttcagt 523
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 666 aaagctagcatctctggaaccttctggagccttcgatagaccacatgttgcagattcagt 725
Query: 524 agg 526
|||
Sbjct: 726 agg 728
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 928
Length adjustment: 10
Effective length of query: 516
Effective length of database: 918
Effective search space: 473688
Effective search space used: 473688
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no148_c14.g1 MSMg01no148_c14.g1 CHROMAT_FILE:
MSMg01no148_c14.g1 PHD_FILE: MSMg01no148_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:58 2005
(383 letters)
>mm_chr13_114179043_114179825
Length = 783
Score = 503 bits (260), Expect = e-147
Identities = 302/332 (90%), Gaps = 28/332 (8%)
Strand = Plus / Minus
Query: 1 aggtaagcaagtaggaggtcagagagatctgggggcagggaaggaggactaatcagagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aggtaagcaagtaggaggtcagagagatctgggggcagggaaggaggactaatcagagca 249
Query: 61 aaacacacacaaaagccatttgtaagacaatttaaaaatatacattaaagccaggagtgg 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 248 aaacacacacaaaagccatttgtaagacaatttgaaaatatacattaaagccaggagtgg 189
Query: 121 tggtgcacacctttaatctagcactcaggaggtagagataggtgaatctctgtgagctca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 tggtgcacacctttaatctagcactcaggaggtagagataggtgaatctctgtgagctca 129
Query: 181 aagccagtctggtctaatagagtgagttccaggacagccagtgctatgtagagagaaaaa 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 aagccagtctggtctaatagagtgagttccaggacagccagtgctatgtagagag----- 74
Query: 241 acaaaaaaacaaaaacc----aaaaaacaaaaaacaaaaaaacaaaaaaacaaaaaaaca 296
||| | |||||||| ||||||||||||||||||||||||
Sbjct: 73 --------------accttgt----atcaaaaaac-aaaaaacaaaaaaacaaaaaaaca 33
Query: 297 aaaaccaacaacaacaaaaacccaaaatgaca 328
||||||||||||||||||||||||||||||||
Sbjct: 32 aaaaccaacaacaacaaaaacccaaaatgaca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space: 289476
Effective search space used: 289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
