BAC Information

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BAC

Clone NameMSMg01-148G03
Chromosome13 (Build37)
Map Location 13,092,328 - 13,092,829
singlet/doubletsinglet
Overlap genePrl2c2
Upstream geneRyr2, LOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754
Downstream geneLOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1, Lyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2, Tbce
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148G03.T7 (MSMg01no148_g03.b1)MSMg01-148G03.TJ (MSMg01no148_g03.g1)
ACCAG351392AG351393
length723730
length of high quality
(start - end)
504 (44 - 547)522 (75 - 596)
definitionCHROMAT_FILE: MSMg01no148_g03.b1 PHD_FILE: MSMg01no148_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:16 2005CHROMAT_FILE: MSMg01no148_g03.g1 PHD_FILE: MSMg01no148_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:16 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATTAAAAATCCTTCATAACATTTGGGAGTCTGAAGAACAATTTTTAG
TTTTCCTGCTCTCCCTGATTTCCCCCAGTGTCTTTAACTCTACTTAATTC
TTGCAGGTCACTGCAATGGATTTTCTTTTATTATAAGTTTGCAGTGTACA
GTGGAAGGGAAAAGGCTAGAATGGTAGGACAGGATAAAGTGTGGAGGAGA
AGGGAAGAAGGGAAAGAAAGGGAATATCAAAATGATAGCTAAAATTAGGA
GCTATTTGAGGGGTACTATGGCAATCTATACAGTACAAACTTCCTAAAAA
ATTTCCATATATGAAGGAAATCTAATGAAATTGCCAGCTAATTGAGACCG
AGCCCCATCTAACTTCCTCCTGTCACAAATGAAGCTTTCTACATGAGTAC
TAGGTTGTATCTAATTGAGTTATTGGTCAAACTGATTAGAAACCATCAAA
CAGTCTAAGATATATTATTGCAAAGACTATGGCTTGTTCTCCACAAACTG
AAGTAAGGTCCTATTGCTAAAGACTATGACTACACTACTCATTTGAATCT
GATAAAGCTGAGATGATGGTTTCATAGAGCCTTCACACTTGTGCGCTAGC
ATCTTTGTCACATGAAGGCACTCTGTACACTATCCAAAGAGAAAACTAAC
CATCTTTTTTGCCCTAAAACTTT
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGACACAACCAAAATCACAGAAGGTA
CAGGCTACAGTCAGATACAGTGAGGGCAGATAGCACTAGAGATAACCAGA
TGGTGAGAGGCAAGCATAAGAATATTAACAACAGAAACCAAGGTTACTTG
ACATCATCAGAACCCAGATCTTCTACCATAGCAAGTCCTAGATACCCCAT
CACACCAGAAATGCAAGAATCAGATATAAAATCACTTCTTATGTTGATGA
TAGAGGACATTAAAAAGGACACAAATAACTCCCCTTTTAAAAAATATAGG
AAATCAGAGATAAACAGGTAGAAGCAATTAAAGAATTACAGGAAAACACA
ACCAAACAGGAGAAAGAACCGAACAAGACTATCCAGGATAAAAAAATGGA
AATAGAAACAATTAAGAAATCAAAAGAAAAAGACAACCAGGATATAGTAA
ACCTAGGAAAGAGATCAGGAATCATAGATGCCAGTATCACCAACAGAAAA
CAAGGGATAGAAGAAAGAATCTTAGAATAGCATAGGAAACATTGACATAT
GATTCAAAGAAATTTGCTAATAGCATAAAGTTCCTAACATAAAACATCCA
GGACATTGAGGAAGATGAGAAATGAGAAGATGAAATCATAGGATAATAGG
TATAGAACAGAGGGAAGATTCCTAACTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_g03.b1 MSMg01no148_g03.b1 CHROMAT_FILE:
MSMg01no148_g03.b1 PHD_FILE: MSMg01no148_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:16 2005
         (504 letters)



>mm_chr13_13092125_13093028
          Length = 904

 Score =  673 bits (348), Expect = 0.0
 Identities = 465/504 (92%), Gaps = 5/504 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcattaaaaatccttcataacatttgggagtctgaagaacaatttttagttttcc 63
           |||||| |||||||||  |||||| ||||||||||| |||| ||||||||||||||||||
Sbjct: 204 ggaattaattaaaaatagttcatagcatttgggagtgtgaaaaacaatttttagttttcc 263

                                                                       
Query: 64  tgctctccctgatttcccccagtgtctttaactctacttaattcttgcaggtcactgcaa 123
           |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgctctccttgattttccccagtgtctttaactctacttaattcttgcaggtcactgcaa 323

                                                                       
Query: 124 tggattttcttttattataagtttgcagtgtacagtggaagggaaaaggctagaatggta 183
           | || |||||||||||||||||||||||||||| |||||||||||| |||||||||| ||
Sbjct: 324 tagagtttcttttattataagtttgcagtgtactgtggaagggaaacggctagaatgtta 383

                                                                       
Query: 184 ggacaggataaagtgtggaggagaagggaaga-agggaaagaaagggaatatcaaaatga 242
            || ||||||||||||||||||| |||||||| ||| |||||||||||| ||| ||||||
Sbjct: 384 agataggataaagtgtggaggagtagggaagacagg-aaagaaagggaacatcgaaatga 442

                                                                       
Query: 243 tagctaaaattaggagctatttgaggggtactatggcaatctatacagtacaaacttcct 302
           ||||||||||||||||||||||||||| ||||||||||||||| ||||||| | ||||||
Sbjct: 443 tagctaaaattaggagctatttgagggatactatggcaatctaaacagtactagcttcct 502

                                                                       
Query: 303 aaaaaatttccatatatgaaggaaatctaatgaaattgccagctaattgagaccgagccc 362
           | || |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 503 agaacatttccatatatgaaggaaatctaatgaaattgctagctaattgagactgagccc 562

                                                                       
Query: 363 catctaacttcctcctgtcac-aaatgaagctttctacatgagtactag-gttgtatcta 420
           ||||| |||||||| |||||| ||||||||||||||||||||||||| | ||||||| ||
Sbjct: 563 catctgacttcctcttgtcaccaaatgaagctttctacatgagtact-gtgttgtattta 621

                                                                       
Query: 421 attgagttattggtcaaactgattagaaaccatcaaacagtctaagatatattattgcaa 480
           ||||||||||||||||||| |||||||||||||||||||||| |||||| | |||| |||
Sbjct: 622 attgagttattggtcaaacggattagaaaccatcaaacagtccaagatacactattccaa 681

                                   
Query: 481 agactatggcttgttctccacaaa 504
           ||||||||||||||||||||||||
Sbjct: 682 agactatggcttgttctccacaaa 705


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)