Query= MSMg01no148_l19.b1 MSMg01no148_l19.b1 CHROMAT_FILE:
MSMg01no148_l19.b1 PHD_FILE: MSMg01no148_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:44 2005
(464 letters)
>mm_chr13_51399710_51400573
Length = 864
Score = 478 bits (247), Expect = e-139
Identities = 322/375 (85%), Gaps = 49/375 (13%)
Strand = Plus / Minus
Query: 1 acctattttaaataaataaaatctacagggaaaactgccagggcaatgtcaaatgatccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 376 acctattttaaataaataaaatctacagggaaaactgccagggcaatgtcaaaggatccc 317
Query: 61 atgccccctgctcagattttacccttctctggctcgcttgctacccaggatgcgaactaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 atgccccctgctcagattttacccttctctggctcgcttgctacccaggatgcgaactaa 257
Query: 121 gtctcttgtccttttgcaaccattgtgagcaagcagcaaccacccctgaatttgcttttc 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gtctctcgtccttttgcaaccattgtgagcaagcagcaaccacccctgaatttgcttttc 197
Query: 181 ttccttccttccttcctttcttccttccttccttccttccttatttccttttccccctct 240
|||||||||||||||||| ||||||||||||||||||||||
Sbjct: 196 ttccttccttccttcctt--------------------ccttatttccttttccccctct 157
Query: 241 ctcaccctccctccctccctccctctttccttccttccttccttccttccttccttcctt 300
|||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 156 ctcaccctccctccctccctcc----ttccttccttccttccttc-tt------------ 114
Query: 301 ccttatttcctttccccc-ctctctcaccctccctccctccctgcccccctccctccctc 359
||||||||||| ||| |||||||||||||||||||||||| | ||||||||
Sbjct: 113 ---tatttcctttcaccctctctctcaccctccctccctccct----ctctccctcc--- 64
Query: 360 tttccttccttcctt 374
||||||||||||||
Sbjct: 63 -ttccttccttcctt 50
Score = 95.5 bits (49), Expect = 7e-24
Identities = 55/57 (96%)
Strand = Plus / Minus
Query: 408 cttccttccttccttccttccttatttccttacccccctctctcaccctccctccct 464
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 197 cttccttccttccttccttccttatttccttttccccctctctcaccctccctccct 141
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 112
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 2
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space: 387716
Effective search space used: 387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no148_l19.g1 MSMg01no148_l19.g1 CHROMAT_FILE:
MSMg01no148_l19.g1 PHD_FILE: MSMg01no148_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:44 2005
(584 letters)
>mm_chr13_51241104_51242087
Length = 984
Score = 1100 bits (569), Expect = 0.0
Identities = 581/585 (99%), Gaps = 1/585 (0%)
Strand = Plus / Plus
Query: 1 tttggtcttggtgtcatctccaggttgcgttgtcttcaagtgggcgagggtctgctctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tttggtcttggtgtcatctccaggttgcgttgtcttcaagtgggcgagggtctgctctcc 259
Query: 61 tcctcaccagcacgtgctttttcattctaatagttcttctactgaggatgtagtttcccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tcctcaccagcacgtgctttttcattctaatagttcttctactgaggatgtagtttcccg 319
Query: 121 ttgtggtttactttgtgtttccctggtgaccagtgatgccataggaatctttttgtgtgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttgtggtttactttgtgtttccctggtgaccagtgatgccataggaatctttttgtgtgc 379
Query: 181 ttagtagacatttgtgtatctctggtgaaatgattgcttagagtcagtagatacatgtct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttagtagacatttgtgtatctctggtgaaatgattgcttagagtcagtagatacatgtct 439
Query: 241 tttattagaaattgtatttcaagatgttctccttctctgggctgtcttttcacttggtag 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tttattagaaattggatttcaagatgttctccttctctgggctgtcttttcacttggtag 499
Query: 301 gggg-tccatcacaacagatccttgccatgttgcttaggctggcctccacgtaactatat 359
|||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 500 gggggtccatcacaacagatccttgccatgttgcttaggctggccttcaggtaactatat 559
Query: 360 gatccaaactggcctcaaagtctccgtcttcctgctctgtgatcatgtccccatgctgga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gatccaaactggcctcaaagtctccgtcttcctgctctgtgatcatgtccccatgctgga 619
Query: 420 ttgcaggtgtgcagtaccatttcctctgtcttttctcatcttgaggatcgtagacaccga 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttgcaggtgtgcagtaccatttcctctgtcttttctcatcttgaggatcgtagacaccga 679
Query: 480 ggtggttaactttcaggtccagttcgtgtcttttgttacttgtgcttttgctgtttttag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ggtggttaactttcaggtccagttcgtgtcttttgttacttgtgcttttgctgtttttag 739
Query: 540 gtttgccgaataaagatcctaacgttaggccttttgttttctttc 584
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gtttgccgaataaagatcctaacgttaggccttttgttttctttc 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
