BAC Information

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BAC

Clone NameMSMg01-149C10
Chromosome13 (Build37)
Map Location 66,581,461 - 66,582,078
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665777, EG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik
Downstream geneC330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149C10.T7 (MSMg01no149_c10.b1)MSMg01-149C10.TJ (MSMg01no149_c10.g1)
ACCAG351951AG351952
length698701
length of high quality
(start - end)		625 (40 - 664)575 (75 - 649)
definitionCHROMAT_FILE: MSMg01no149_c10.b1 PHD_FILE: MSMg01no149_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:19 2005CHROMAT_FILE: MSMg01no149_c10.g1 PHD_FILE: MSMg01no149_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:19 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATT
CACCTTTAACAATAGGACCCAGGGCTGGAGAGATGGCTCAGCGGTGAAGA
GACCCGACTGCTCTCCCGAAGATTCTGAGTTCAAGTCCCAGCAACCACAT
GGTGGCTCAAAACCATACATAGTGAGATCTGACGACCTCTTCTGGTGTGT
CTGAAGACAGCTACAGTGAACTTACATATAGCAATAAATAAATCTTAAAA
AAAAAAAAGAAAAAAAGGACCCAGGAGGGATGGGTTGAAGAACTTGGGGA
GGGGAACCAGAGAGGGGGGCAACATTTGGAATGTAAATAAATAAATAATT
TACTTAAAATAAAAGAATATTAGGATCCAGTGAAAGCCAGGCATGGTGGC
ACAAACCTCTAATTCCATTGCTTGGGAGACAGGGGCAAGCAGATCTCTGT
GAGTTTGAAGCCCAGCTTGGTTTACATAGTATGTTCCACAGCTGCATATG
GAGGCCCTGTCTCCAACCAAACCAGCCAACCAACCAACCAACCATACAGG
ATATGTGGCCAATGAGATAGCTCTGGGAGTATAGTACTGTCAGACCTGAG
GGGGAAAAAAAAACATTCTCATAACTTTCTGCTTAAAGCAAGCTGTGCCC
AAGGAACTGACCAGACAACTGATTGCCTCCTGCTAAGTTGGAGTTTCA

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGAGGGCCAGGTGCTTATCGAAGTCA
GCAGAACATCTGGTTAACTTTTAACCAAGGTAGACAGGGTGGGAGATAGG
GAGGCGCCTGGCCAATCCCCACATTCTTGTATATCTTCTCTATCTTTATG
GCTAGCCAGTTCCTAGGATGACTTTACAGCCTTTGTTCTTTGCTCTAGGC
CCAAAAAGCCTTCCTAACTAGCAAGCTGCTTGAGTCATGGATCTTGAATA
TTAATTTTCTTTCACCTAGAAGTAGAGATAAGGATTTGTTTGATTCCCTA
ACAAAAGCTCCTTCCTCTTTCTACACAGGTAACCTAGCAACTTTTTACAT
GACAAAGCCTTGCCTGCCTACCTGCTCTCAGATCAGCCTGGAAATCAAGC
CCTGAGGAGCCTTTGTCAGATTTAAACACACAAATACCACTCCTGGTGTC
CTCTCTTTTGGAATATCAGCCTTGATTCCCGTGGGCAGGCTTCATGCTCA
CTGTGATTTATGCCTAGCCCTGACCTGGGAGAACTTTCACAGATGGGATG
CTGTGTTTCTCTCATGAGTTTAGAACACCCAGGGCTTGAAATCAGACAAT
GCCCTGGCTTCGATTTAAAAAGCCTTTTTAAAAAATGGAGTCTGACTCTC
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_c10.b1 MSMg01no149_c10.b1 CHROMAT_FILE:
MSMg01no149_c10.b1 PHD_FILE: MSMg01no149_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:19 2005
         (625 letters)



>mm_chr13_66581260_66582278
          Length = 1019

 Score = 1029 bits (532), Expect = 0.0
 Identities = 598/626 (95%), Gaps = 15/626 (2%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcaccttt-aacaataggacccagggctggagagatggctcagcggtgaagagacc 65
           |||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 202 gaattcacctttaaaaaataggacccagggctggagagatggctcagcggttaagagacc 261

                                                                       
Query: 66  cgactgctctcccgaagattctgagttcaagtcccagcaaccacatggtggctcaaaacc 125
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tgactgctctcccgaagattctgagttcaagtcccagcaaccacatggtggctcaaaacc 321

                                                                       
Query: 126 atacatagtgagatctgacgacctcttctggtgtgtctgaagacagctacagtgaactta 185
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 322 atacatagtgagatctgacgacctcttctggtgtgtctgaagatagctacagtgaactta 381

                                                                       
Query: 186 catatagcaataaataaatcttaaaaaaaaaaaa---gaaaaaaaggacccaggagggat 242
           ||||||||||||||||||||||||||||||||||   ||||| |||||||||||||||||
Sbjct: 382 catatagcaataaataaatcttaaaaaaaaaaaaaaagaaaagaaggacccaggagggat 441

                                                                       
Query: 243 gggttgaagaacttggggaggggaaccagagaggggggcaacatttggaatgtaaataaa 302
           ||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
Sbjct: 442 ggggtgaagaacttggggaggg-aaccagaaaggggggcaacatttggaatgtaaataca 500

                                                                       
Query: 303 taaataatttacttaaaataaaagaatattaggatccagtgaaagccaggcatggtggca 362
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 taaataatttacttaaaataaaagaaaattaggatccagtgaaagccaggcatggtggca 560

                                                                       
Query: 363 caaacctctaattccattgcttgggagacaggggcaagcagatctctgtgagtttgaagc 422
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaacctctaattccattgcttcggagacaggggcaagcagatctctgtgagtttgaagc 620

                                                                       
Query: 423 ccagcttggtttacatagtatgttccacagctgcatatggaggccctgtctccaaccaaa 482
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccagcttggtt-acatagtatgttccacagctgcatatggaggccctgtctccaaccaaa 679

                                                                       
Query: 483 ccagccaaccaaccaaccaaccatacaggatatg---tggccaatgagatagctctggga 539
           |||||||||||||||| |||||||||||||||||   |||||||||||||||||||||||
Sbjct: 680 ccagccaaccaaccaatcaaccatacaggatatgatgtggccaatgagatagctctggga 739

                                                                       
Query: 540 gtatagtactgtcagacctgagggggaaaaaaaaacattctcataactttctgcttaaag 599
           ||| |||||||||||||||||||      ||||||||||||||||||||||||||||| |
Sbjct: 740 gtagagtactgtcagacctgagg------aaaaaacattctcataactttctgcttaatg 793

                                     
Query: 600 caagctgtgcccaaggaactgaccag 625
           ||||||||||||||||||||||||||
Sbjct: 794 caagctgtgcccaaggaactgaccag 819


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1019
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1009
Effective search space:   620535
Effective search space used:   620535
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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