BAC Information

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BAC

Clone NameMSMg01-150G22
Chromosome13 (Build37)
Map Location 31,090,187 - 31,090,312
singlet/doubletsinglet
Overlap geneLOC100041257
Upstream geneMboat1, Agtr1a, Uqcrfs1, Dusp22, LOC666443, Irf4, Exoc2, Hus1b, EG432743
Downstream geneLOC100041266, G630018N14Rik, LOC100042491, Foxq1, LOC100041312, Foxf2, Foxc1, 4930548F15Rik, Gmds, LOC666212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150G22.T7 (MSMg01no150_g22.b1)MSMg01-150G22.TJ (MSMg01no150_g22.g1)
ACCAG352876AG352877
length740833
length of high quality
(start - end)
373 (42 - 414)126 (74 - 199)
definitionCHROMAT_FILE: MSMg01no150_g22.b1 PHD_FILE: MSMg01no150_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:59 2005CHROMAT_FILE: MSMg01no150_g22.g1 PHD_FILE: MSMg01no150_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCACCTGATGACTACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAA
CATCCTTAATCATCAGGGAAATGCAAATCAAAACAACACTGAGATTCCAC
TTCACTCCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCAGATG
CTGGCGAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTGGTGGGATT
GCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCCTCAGAAAA
TTGGACATAGTACTACTGGAGGATCCAGCAATACCTCTCCTGGGCATATA
TCCAGAAGATGTCCCAACCGGTAAGAAGAACACATGCTCCACTATGTTCA
TAGCAGCCTTATTCCCCCCAACCAGAAGCTGGAAAGAACCCAGATGCCCC
TCAACAGAGGAATGGATACAGAAAATGTGGCACATTTACACAATGGAATA
CTACTCAGCTATTAAAAAAAATGAATTTATGAAATTCCTAGGCAAATGGA
TGGACCTGGAGGGCATCATCCTGAGTGAAGTAACCCAATCACAAAGGAAC
TCGCACAATATGTACTCCCTGATAAGTGGATATTAGCCCCGACACTTAGG
ATACCCCAGATATAAGATACATCTTTGCCAACCCCTGATATTCACGAAGA
CCGAAGAACAACGCGTGGACACTCTACCCTTTCCTAGAAA
TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGGTTAATGTTCACAGTTAAGGCACTGA
TAAATAAATTGAATACAGACAAATCAAGTCACAGCTACAAGGTCAAGTCA
CTCAGAAGAATAGAATAGTGTGGAAGTGAGATGTGTGTGTGTGTAGGTGT
CCCCCCNCTCCNTTNCCTTCTCCTCTCTCCCCCTCCCCCCTCTCCTCTTC
CTTTTCCCTCCTCTCTCTCCTTTTTACATTTTTTTTTCCTCCTCTCCCCT
TCTCCCCTTCCCCCCCTCCCNNNACCCCCTTTTTTTTTTCTTTTTTATTC
TTTTCTTTCCTTTAACTCTTTCCCTCCTCTTTCTCCTTCCTTTTACACCT
TCTCCTTTCTTTTTTTCCTTTTTTTATCCCACCCTCTCTTCCCCCTTTTT
TCTTTCCCCCCCCTCTTTTCCCCCCTCCCCTCCCCCCCTTTTTTTTTTTT
CCCCCCCCCTTTTCCCCCCCCTTCCCCCCCCCCTTTTTTTTTTTCCCCCC
CCCCCCCCCCTTTCCCCCCCCCCCCCCCCCTCTTTTCCCCCCTCTTTCTT
TTCCCCCCTCTTTNTCCCCCTTTTTCCCTCCCCCCCCTCCCCCCTTTTTT
CCTTTCTTTTCCTTTTTCCCCCCCCTCTTCCCTTTTTTTCCCTTTTTTTT
TCCTCCTTTTTCCCCTCCCCCCCCCCTCTTTCTTTTTTTTCTCCCCCTTT
CTTCCCTTTTTTCTTTTCCCCCCCCTTTCTTTTCTCTTTTCTTTTTCTCT
CTCCCCCCCTCTTTTCTCTTTCCCCTCTTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_g22.g1 MSMg01no150_g22.g1 CHROMAT_FILE:
MSMg01no150_g22.g1 PHD_FILE: MSMg01no150_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:59 2005
         (126 letters)



>mm_chr13_31089987_31090512
          Length = 526

 Score =  244 bits (126), Expect = 2e-69
 Identities = 126/126 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggttaatgttcacagttaaggcactgataaataaattgaatacagacaaatcaagtcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggttaatgttcacagttaaggcactgataaataaattgaatacagacaaatcaagtcaca 260

                                                                       
Query: 61  gctacaaggtcaagtcactcagaagaatagaatagtgtggaagtgagatgtgtgtgtgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctacaaggtcaagtcactcagaagaatagaatagtgtggaagtgagatgtgtgtgtgtg 320

                 
Query: 121 taggtg 126
           ||||||
Sbjct: 321 taggtg 326


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 126
Length of database: 526
Length adjustment: 8
Effective length of query: 118
Effective length of database: 518
Effective search space:    61124
Effective search space used:    61124
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)