Query= MSMg01no150_m17.b1 MSMg01no150_m17.b1 CHROMAT_FILE:
MSMg01no150_m17.b1 PHD_FILE: MSMg01no150_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:27 2005
(590 letters)
>mm_chr13_101433767_101434756
Length = 990
Score = 1089 bits (563), Expect = 0.0
Identities = 581/587 (98%)
Strand = Plus / Minus
Query: 4 ggaattcttttactcaggaagtacttactcgggccttgcaaatgtctttggctcagtata 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 ggaattcttttactcaggaagtacttactcgggccttgcaaatgtctttggctcagtata 534
Query: 64 accatatccatagatttagtttacagagagcagacaaagcagctactcttcaaagactgt 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 533 accatatccatagatttagtttacagagagcagacaaagcagctactcttcaaagagtgt 474
Query: 124 cttctcgtgggattatcagccagcctcatgaacctgaacaaactttatttgccttaagaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 cttctcgtgggattatcagccagcctcatgaacctgaacaaactttatttgccttaagaa 414
Query: 184 caaagtcagtgtttcttctttcccttaccttgtttcaagtcgtttatacaatacaccatt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 caaagtcagtgtttcttctttcccttaccttgtttcaagtcgtttatacaatacaccatt 354
Query: 244 atctgttctcaacacaaacactatatgaaaccagcgttccgggaagaagtcacagccatg 303
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 353 atctgttctcaacacaaacactatatgaaaccagcgttcggggaagaagtcacagccgtg 294
Query: 304 gtaatccacaatcacgccgccctcctgcatctgatgctctaactcatcgacaacctgtga 363
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gtaatccacaatcacaccgccctcctgcatctgatgctctaactcatcgacaacctgtga 234
Query: 364 tgggcacacaccaataaaaaggatgaatggcgggcggtggtggcgcacgcctttgatccc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 tgggcacacaccaataaaaaggatgaatggcgggcggtggtggcgcacgcctttgatccc 174
Query: 424 ggcagctgtgccctcgctcagtggtacttaccctatcctcatctagaatgggacagccat 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 agcagctgtgccctcgctcagtggtacttaccctatcctcatctagaatgggacagccat 114
Query: 484 actcttcatcgtagccgtcgtataactgccctgcaagagggtacacgagctcgttagtag 543
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 actcctcatcgtagccgtcgtataactgccctgcaagagggtacacgagctcgttagtag 54
Query: 544 tttccaagcagccctcactgacttaagttaattctagattgaggaaa 590
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 tttccaagcagccctcactgacttaagttaattctagattgaggaaa 7
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space: 568400
Effective search space used: 568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no150_m17.g1 MSMg01no150_m17.g1 CHROMAT_FILE:
MSMg01no150_m17.g1 PHD_FILE: MSMg01no150_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:27 2005
(338 letters)
>mm_chr13_101397779_101398516
Length = 738
Score = 433 bits (224), Expect = e-126
Identities = 294/340 (86%), Gaps = 38/340 (11%)
Strand = Plus / Plus
Query: 1 tgatttttggattatgtcttttctaaatgtaaaatctgacatgtctccaactacttccca 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 tgatttttggattatgtcttttctaaatgtaaaatctgacatgtctcaaactacttccca 260
Query: 61 cttcacctgtcagctctggattgttttctccctttgcctgtctcagcacagaggcctgag 120
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 261 cttcacctgtcagctctggattgttttctccctttgcctgtctcagtacagaagcctgag 320
Query: 121 gggttgcatttactgaataagtatttacagaagaagtgttgcatttactgtctgggaaga 180
||||||||||||||| |||||| |||
Sbjct: 321 gggttgcatttactg-----------------------------------tctgggcaga 345
Query: 181 agctgttctacctccagaagcagggtcagaaatgacggagagggatggggtgagaatgg- 239
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||
Sbjct: 346 agctgttctacctccagaagcaggatcagaaatgacggagagggaaggggtgagaacggg 405
Query: 240 cacaaggctgggaggtgagctgtcccagggacactgaggctgggaggtgagctgtcccag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 cacaaggctgggaggtgagctgtcccagggacactgaggctgggaggtgagctgtcccag 465
Query: 300 ggacactgaggctggagag-tgagctgtcccagggacact 338
||||||| ||||||| ||| ||||||||||||||||||||
Sbjct: 466 ggacactaaggctgg-gaggtgagctgtcccagggacact 504
Score = 157 bits (81), Expect = 1e-42
Identities = 93/97 (95%), Gaps = 4/97 (4%)
Strand = Plus / Plus
Query: 244 aggctgggaggtgagctgtcccagggacactgaggctgg-gaggtgagctgtcccaggga 302
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 570 aggctgggaggtgagctgtcccagggacactgaggctggagag-tgagctgtcccaggga 628
Query: 303 cactgaggctggagag-tgagctgtcccagggacact 338
||||||||||||| || ||||||||||||||||||||
Sbjct: 629 cactgaggctgga-aggtgagctgtcccagggacact 664
Score = 149 bits (77), Expect = 2e-40
Identities = 92/97 (94%), Gaps = 4/97 (4%)
Strand = Plus / Plus
Query: 244 aggctgggag-gtgagctgtcccagggacactgaggctgggaggtgagctgtcccaggga 302
||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 602 aggct-ggagagtgagctgtcccagggacactgaggctggaaggtgagctgtcccaggga 660
Query: 303 cactgaggctggagag-tgagctgtcccagggacact 338
|||||||||||| ||| ||||||||||||||||||||
Sbjct: 661 cactgaggctgg-gaggtgagctgtcccagggacact 696
Score = 130 bits (67), Expect = 1e-34
Identities = 85/93 (91%), Gaps = 6/93 (6%)
Strand = Plus / Plus
Query: 244 aggctgggaggtgagctgtcccagggacactgaggctgggaggtgagctgtcccagggac 303
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 aggctggaaggtgagctgtcccagggacactgaggctgggaggtgagctgtcccagggac 693
Query: 304 actga----ggctggagag-tgagctgtcccag 331
||||| ||||||| || |||||| ||||||
Sbjct: 694 actgatcagggctgga-aggtgagctatcccag 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 5
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space: 239841
Effective search space used: 239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
