BAC Information

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BAC

Clone NameMSMg01-150M18
Chromosome13 (Build37)
Map Location 72,866,914 - 72,867,252
singlet/doubletsinglet
Overlap genenone
Upstream geneIrx1, LOC100042828, LOC100042832, LOC100042836, Irx2
Downstream geneLOC621486, Irx4, LOC100042864, Ndufs6, Mrpl36, Aytl2, Slc6a3, Clptm1l, Tert, Slc6a18, Slc6a19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150M18.T7 (MSMg01no150_m18.b1)MSMg01-150M18.TJ (MSMg01no150_m18.g1)
ACCAG353139AG353140
length736782
length of high quality
(start - end)
340 (73 - 412)---
definitionCHROMAT_FILE: MSMg01no150_m18.b1 PHD_FILE: MSMg01no150_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:27 2005CHROMAT_FILE: MSMg01no150_m18.g1 PHD_FILE: MSMg01no150_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGACACCAACCGCGGAA
TTCCATACATTTCTTCTTTCTACAGAAGCTCCAGGACAAGGATCACTCAA
CAAGGTAAGACTGCTATTTCAGTCTCTGCTGGTAGCTTGTCACCATCCTT
CTAAGGGCAGAGCTGTAGAGTGGAAGCTCTGTCCTGGTGAGGCAGGCCCC
AACTGTACTACTTTTGGGAGACTCTCTGTCATCAAGGTGCAGAGATTCTT
TTGTGTTCTGCATTAGAAAGTGACACCCTTGGAGTGGATTCTCTGAAATT
ACCTTATTGCCTCCACTCATGATCTGTTCAGATCCATACTTACATATTAC
AAATCTTGTTACCAACCTGAAAGGATCCCTTTGTGTCCTAGGTATCTTGT
CACAGAAATCACCACCTCCGGGTTGACTGTAAAGTGCTGTGGGCTGACTG
TAAAGTGCTGTGGGCTGACTGTAAAGTGCTGTGGGCTCACTGTAACGTGC
TGTGGGCTCACTGTAAAGTTCTGCGAGCTCAACGCGAAGTCATGCGGTCT
CATTCTAAAGTGCTGTGGCCTTACTGCACAGCGCTGTGGCCTCACTGTAA
CGCTCTGTGGTCTCAACGCGAAGCCATGTGGCCTCCCTCTCAAGTGCCCC
GCCCCCCCCCTAAAGCGCTGTGTCCTCCCCGCCAAGCGCTGCGCTCCCCC
TGTTAACCCCCCCGCTCCCCCTGCTATCCCCCTTTN
TCAATACACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTAAGCATTACCAGATTACTTAGTCCCCAAACATGG
GAGCCAATATGATGAACTTCCATTCATGTGCCGCCCGTGTGTCTGTCTGC
GTGTCGTATCGCCACACCACANCNTCTAAACCCCCAAAAAAACACCCACA
ATCAACCCAAAAAAAACCACCACCACTCACCCCCCAAACCCCACCCACAC
ACCCCTTTCCCCCCCCCCCCCCCTCACATCTCCACCCCCCCCCCCCCCCC
CCCACAANNNNCNNCCCTTCACTCCTTTAAAAAAAAAAAAAAANAAAACC
ACCCCCTTTCTTTATCCCCCCCCCCCCCCCCCCCACCCCATTTATATAAA
AAAATAAAAAATATCCCCCCCCCCTACCAAAAAACCCCCCTCTTCCCCCC
CCCCCCCCCCCAATTTAACACCCCCCCCCTAAACCCCCCCCCACCCCCCC
CCACTTTACAACCCCCCCCCCCCCCCAAAACCCCCCCCCCCCCCCCATAA
CCCCCCACCCCCCCCCCCCACCAAACCCCCCTTCCCCCCCCCCCCTCCCC
CTATTCAATTTTATACCCTATTCCCCCCCCCCTTCACCAACAAAACCCCA
ACAAAAAACCCCAACAACCCCCCCCCCCCCCCCACCAACAACCTCCCCCC
TCTCCCACTACCCCAAACCCACCCCCCCCAAATACCCCCCCCCCCCACAC
CCCCCCCCCCAACAACACCACCACCCACCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_m18.b1 MSMg01no150_m18.b1 CHROMAT_FILE:
MSMg01no150_m18.b1 PHD_FILE: MSMg01no150_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:27 2005
         (340 letters)



>mm_chr13_72866714_72867453
          Length = 740

 Score =  625 bits (323), Expect = 0.0
 Identities = 335/339 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaagctccaggacaaggatcactcaacaaggtaagactgctatttcagtctctgctgg 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 cagaagctccaggacaaggatcactcaacaaggtaagactgttatttcagtctctgctgg 260

                                                                       
Query: 61  tagcttgtcaccatccttctaagggcagagctgtagagtggaagctctgtcctggtgagg 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagcttgccaccatccttctaagggcagagctgtagagtggaagctctgtcctggtgagg 320

                                                                       
Query: 121 caggccccaactgtactacttttgggagactctctgtcatcaaggtgcagagattctttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggccccaactgtactacttttgggagactctctgtcatcaaggtgcagagattctttt 380

                                                                       
Query: 181 gtgttctgcattagaaagtgacacccttggagtggattctctgaaattaccttattgcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgttctgcattagaaagtgacacccttggagtggattctctgaaattaccttattgcct 440

                                                                       
Query: 241 ccactcatgatctgttcagatccatacttacatattacaaatcttgttaccaacctgaaa 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 ccactcatgatctgttcagatccatacttacatattacagatcttgttaccaacctgaaa 500

                                                  
Query: 301 ggatccctttgtgtcctaggtatcttgtcacagaaatca 339
           |||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 ggatccctttgtgtcctaggtatcttgtcacagagatca 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)