BAC Information

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BAC

Clone NameMSMg01-151I13
Chromosome13 (Build37)
Map Location 89,763,839 - 89,764,026
singlet/doubletsinglet
Overlap genenone
Upstream geneEdil3, Hapln1, EG667266
Downstream geneVcan, LOC100042940, Xrcc4, Tmem167, LOC100043170, LOC624190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151I13.T7 (MSMg01no151_i13.b1)MSMg01-151I13.TJ (MSMg01no151_i13.g1)
ACCAG353672AG353673
length747721
length of high quality
(start - end)
56 (181 - 236)184 (77 - 260)
definitionCHROMAT_FILE: MSMg01no151_i13.b1 PHD_FILE: MSMg01no151_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:22 2005CHROMAT_FILE: MSMg01no151_i13.g1 PHD_FILE: MSMg01no151_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCCCACACATCCGCGGAAT
TCCATGGATTTCATTGCAAACTGCATGACATGGATACCAGAACCTAAACT
CAAGTCCTCTAGAAGAGCAGAATATGTTCTTAACCACTCAGTCATCCCTC
CAGCCCCCAAGGTTGCTTTACTATCTGCTCTTTTTCTGATGAACTTTATT
ATACTTAGTGTGAACTATTGATGCCACATGAATCTAGAGCGACAAAACAA
GGACCCCCAACTAACAATTGCTCAGATCTGATTGCCTGTTGGTGCCTCGT
GAATCATTATCTTAATTACTATTTGATCTATAAATTCCACCACACTGTGG
ACAATGTCATTTTTAACAGGCATTTTTTCAGCTACCCCACAACAGCACAT
GAGCACGCTATCCCCCCCCCACAACAACCACTGTTCCTCTGTACCTTTCC
CTCAGTACTCTTGCCTCGAGCCTCCCCCCTGGCCTCCCTCGCCAATGAAC
TCCACCCTGTACCCCCAATCCCCCCTTTCCTCCCCCCCCTGTCCCGGTTC
CCCTGTCCGCCGTTGACTTCCCCGTCAATGTTCTTCCCCCCCCCTTCCCC
CCCCTGCCCTCTGTCCCCCCCCATTACCTTCCGCTCCCCCTGCCCTTCTC
CCTTTCCCTACCCCTCACCCCCTTTCCCCCCTTTTTCCCCCCCTTTCCCC
CCTTTTCCTTCCCCTCCTTCCCCCCCCCCCATTCCCCTGCCCCCCTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTATCCATCTCCAATTTATTC
TTGGAACTAAAGTTCTGATACTGGACTTTAAGGTTCCCAAAAGGTCTTTC
TCCTCAAACAATGAATTCTTATCTCCTATGACTTATCATACCCACACACA
CAACACACACACACAAACACACACACAAGCACACACATCACACACACACA
CACACAAACACACACACACACATACACACACACACACACACACACACACA
CACACACACACACACACACCTATTTTTCAGACGCCTATGTATACATGATT
CTTCCACGGACAAAGATGAACGTGCTGTATCACCCCCAAGTCCTAAATGC
TTTTTACATTTAGATGACACGAATTAATTTATCTAAATAATCCAATAGCC
AAAGTTACCATTACAATTAAATCAGTTAATTTTGGCACATGTCAGTACAA
ACCCACTCCCTGCAGGATTTCCTTTGCCAGAAACATAGCTGCTCCATTCT
TGGCTCAAGAAACATGTTTCTTGCCTAGAAACCTCAAATGGTCTGAGATG
CTCATGCGGCAAGGTGCATTGACTCTCTCCAGNCTGCCGCTACTATCTCT
CATTGTTTCTCACCCGCGGAGTCCAGACAAACTTCCCCCGAAATCTGACA
CACTGACTATGATACCACGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_i13.g1 MSMg01no151_i13.g1 CHROMAT_FILE:
MSMg01no151_i13.g1 PHD_FILE: MSMg01no151_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:22 2005
         (184 letters)



>mm_chr13_89763715_89764298
          Length = 584

 Score =  321 bits (166), Expect = 2e-92
 Identities = 179/188 (95%), Gaps = 8/188 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctttatccatctccaatttattcttggaactaaagttctgatactggactttaaggttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 cctttatccatctccaatttattcttggaactaaagttctgatactggactttaaggttc 253

                                                                       
Query: 61  ccaaaaggtctttctcctcaaacaatgaattcttatctcctatgacttatcatacccaca 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 252 ccaaaaggtctttctcctcaaacaatgaattcttatctcctatgacttatcacacccaca 193

                                                                       
Query: 121 cac--------acaacacacacacacaaacacacacacaagcacacacatcacacacaca 172
           |||        |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 cacccacacacacaacacacacacacaaacacacacacaagcacacacatcacacacaca 133

                   
Query: 173 cacacaca 180
           ||||||||
Sbjct: 132 cacacaca 125


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 83
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 584
Length adjustment: 8
Effective length of query: 176
Effective length of database: 576
Effective search space:   101376
Effective search space used:   101376
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)