BAC Information

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BAC

Clone NameMSMg01-152D19
Chromosome13 (Build37)
Map Location 106,853,954 - 106,854,338
singlet/doubletsinglet
Overlap genenone
Upstream gene4933425L06Rik, LOC100040646, LOC100040656, Rnf180, Htr1a, EG668025
Downstream geneOlfr717-ps1, LOC631097, EG620949, Ipo11, Dimt1, Kif2a, LOC100040322
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152D19.T7 (MSMg01no152_d19.b1)MSMg01-152D19.TJ (MSMg01no152_d19.g1)
ACCAG354177AG354178
length755748
length of high quality
(start - end)
417 (43 - 459)473 (69 - 541)
definitionCHROMAT_FILE: MSMg01no152_d19.b1 PHD_FILE: MSMg01no152_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:16 2005CHROMAT_FILE: MSMg01no152_d19.g1 PHD_FILE: MSMg01no152_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATCCGCGGAAT
TCTTTGTTCAGTTCTCAGCCCCATTTTTAAATGGGGTTATTTGATTTTCT
GAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTAT
CTGATTTAGGATAGGTAAAGATTCTTCCCCAATCTGTTGGTGGTCTTTTG
GTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGGAGTTTCATGAG
GTCCCATTTGTCAATTCTTGATTTTACAGCACAAGCCATTGCTGTTCTAT
TCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTCCAGCTTCCAGC
CAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGA
AAATGTGGTACATTTACACGATGGAGTACTACTCAGCTATTAAAAAGAAT
GAATTTATGAAATTCCTAGCCAAATGGATGAACCTGTAGGGCATCATCCT
GAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCATCGA
TAAGTGTACATTATCCTCCCCCCTCGGATATCTAAGATATTAATATACCA
TTTGCTAATCACTTGACCCCCCCCATTAATGCCCCCCTGATTTGTGCCCA
CTCTTTTCCTCTCCCTATAATTGGTTACCTATTCTCCCATGGTCCGATTC
ACCTTAGACCTATCCCGTTATTTGATATTAATGCCCCCTTTCATCTCAAG
ATTGG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCCCAATTCCTCTGCTAAGACTGAAGGGGAAGGCATCCT
CAATAAACTTCAGCACATTTGTTTCAAATATTACATTTAGTGTCTTTACT
CTCTAGTCAAATGATGAGTGGCTTAATGTGCATCATCATTTATAAGTGTG
ATTTGCTCTTTCTGGTAGTGAGTGTGTTTTGTAGCTGATGACTAAGATAA
TAATGAGGTTGGAGACTCTTATGGAAGAATTGAAGGCTCTGAAGTGAATG
GAATCCCACAGGAAGACCAAAAGAATCAACTAACCTTGGCTCCTGAGAGC
TCTTAAAGACTGAGCTACCAACCAAGGAGCATACACAGGCTGGAACTAGG
CCCCCAACACATATGCAGCAGACATGCAGCTCAGTGTCCATGGCTACCCT
GTCTGGCCTCAATGGAAGAGGAATGCCTAATCTGGTAGAGACTTGATGCA
CCAGGGTTGGGGGACTCCCAAAGGGTCCACCCTCTCATAGGAGAATGGGA
GGTTAGATGTAAAGATGAATTCTCGTAAGGCGACTAGAAGCCATGCATTC
CCTGATATGTCCCTTTCTTTTCCCTCTTTAAATAATCAATGACTTTTTTT
GAACTTTTATTTTTCTGTACTTCTGATGCATTACAAAGCGTGCCCCTTAT
TCTTATTATTTCTCTCTCTCCTTCATTTTTTCAATCTCCTCTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_d19.g1 MSMg01no152_d19.g1 CHROMAT_FILE:
MSMg01no152_d19.g1 PHD_FILE: MSMg01no152_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:17 2005
         (473 letters)



>mm_chr13_106853954_106854826
          Length = 873

 Score =  721 bits (373), Expect = 0.0
 Identities = 382/385 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctctgctaagactgaaggggaaggcatcctcaataaacttcagcacatttgtttcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcctctgctaagactgaaggggaaggcatcctcaataaacttcagcacatttgtttcaaa 326

                                                                       
Query: 61  tattacatttagtgtctttactctctagtcaaatgatgagtggcttaatgtgcatcatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tattacatttagtgtctttactctctagtcaaatgatgagtggcttaatgtgcatcatca 266

                                                                       
Query: 121 tttataagtgtgatttgctctttctggtagtgagtgtgttttgtagctgatgactaagat 180
           |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttagaagtgcgatttgctctttctggtagtgagtgtgttttgtagctgatgactaagat 206

                                                                       
Query: 181 aataatgaggttggagactcttatggaagaattgaaggctctgaagtgaatggaatccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aataatgaggttggagactcttatggaagaattgaaggctctgaagtgaatggaatccca 146

                                                                       
Query: 241 caggaagaccaaaagaatcaactaaccttggctcctgagagctcttaaagactgagctac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 caggaagaccaaaagaatcaactaaccttggctcctgagagctcttaaagactgagctac 86

                                                                       
Query: 301 caaccaaggagcatacacaggctggaactaggcccccaacacatatgcagcagacatgca 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 85  caaccaaggagcatacacaggctggaactaggtccccaacacatatgcagcagacatgca 26

                                    
Query: 361 gctcagtgtccatggctaccctgtc 385
           |||||||||||||||||||||||||
Sbjct: 25  gctcagtgtccatggctaccctgtc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)