BAC Information

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BAC

Clone NameMSMg01-153H06
Chromosome13 (Build37)
Map Location 10,408,978 - 10,409,598
singlet/doubletsinglet
Overlap genenone
Upstream geneDip2c, LOC666986, Zmynd11, Chrm3, LOC100039604
Downstream geneLOC100039648
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153H06.T7 (MSMg01no153_h06.b1)MSMg01-153H06.TJ (MSMg01no153_h06.g1)
ACCAG355049AG355050
length731787
length of high quality
(start - end)
626 (44 - 669)116 (132 - 247)
definitionCHROMAT_FILE: MSMg01no153_h06.b1 PHD_FILE: MSMg01no153_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:50 2005CHROMAT_FILE: MSMg01no153_h06.g1 PHD_FILE: MSMg01no153_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAATCCTGACCCTAGCAGCAAGAGCAGCAAGCACCAAAGTAGAGCAAA
AAACAAAAATAAACCAAGGTTCTGTATGGCCAAATAAATAAGTATTCTGA
GAAACTAGGAAGGCAGCCCTGGGAATTGGGTTCAGAATTTGGTCCTGACT
CCCTGTCTGGATGTATTTTTATCAAACTGACATCCTGACAGTCAGGATGA
ATGAAAGATTCCCCAAAGTGAACATCATGGAAGGAAGAAGGCAGGAGGCT
TGACTATGTGGAATGCATATACTCTGAGAGAGAAAAGTAAGTCAGAAGCA
GAAAAATCAAAAAGCTATCCAGGGACTTGCAAATGGAAGCTCTGAGTTAC
AGCTCATGGCCACACACGGAACAGGACATTTATGATGCTCACTAGACAGA
GCTCAGGAGAAGGGTGGCAAGCAGGAGCTGTTGGATTGGATAATGACAGA
TACTAATCAATTGGAAAGCCAAACATGAAATCTAGGATCTGATACCTAGT
TGAAAAAGATTGTAATGGAATGAGAAAATAAAGTCAATATTTTAAAAATT
ATTTGAAAACCAGAAAGGCATTCATTATTTTATCCTTTGCAGAATAGTTC
AATCATGGGGAGACAGGAGATCAGGTAGTGAGGGGGTTCACATTAGCTAA
ATGTGGAGAGTCCTGGAAATGGCCATGTTTA
TCTTTTCTCTTATCCTTCCGCATCTTATTCCCTTTCCNNTTTTTTTTCNC
CTCCCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACACCTGAGGAATACCGAA
TGGCAGAGAAGCACTTGAAAAAATGCTCAACATCCTTAATCATCAGGGAA
ATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGC
TAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGCGGACGTGCAGAAA
GAGGAACACTCCTCCATTGTTGGCGGGACTGCAGGCTTGTACAACCACTC
TGGAAATCAGTCTGGCGGTTCCTCAGAAACTTGGACATAGCACTACCGGA
GGATCCAGCAATACCTCTCCTGGGTATATATCCAGAAGATGCCCCACCAG
GCAATAAGGACATATGCTCCACCATGTTCACAGCAGCCTTATTTATAACA
GTCAGAAGCTGGAAAGACCCAGATGCCCCTCAACAGAGGAATGCATACCG
ACAATGTGTTACATCTATCCAATGGAGTACTACTCACCTACTACCAAGAA
CGAACTCATGACATTCCTATCCCAAATGTATGGACCCGAATGGCATCCTC
CCTGATGCACCAACTCTTTTTTTATTACCCTCACACATTATGCTTTCTCT
GATTAACTGTATATCAGCTCCCAACCTTAGCATTCTAAGTATATAAGACA
CCATTTCGTTACACCCTTCGATTCTCTTTAATTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_h06.b1 MSMg01no153_h06.b1 CHROMAT_FILE:
MSMg01no153_h06.b1 PHD_FILE: MSMg01no153_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:50 2005
         (626 letters)



>mm_chr13_10408774_10409798
          Length = 1025

 Score = 1096 bits (567), Expect = 0.0
 Identities = 609/623 (97%), Gaps = 3/623 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatcctgaccctagcagcaagagcagcaagcaccaaagtagagcaaaaaacaaa 64
           |||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 205 gaattcaatcctgagcctagcagcaaaagcagcaagcaccaaagtagagcaaaaa-caaa 263

                                                                       
Query: 65  aataaaccaaggttctgtatggccaaataaataagtattctgagaaactaggaaggcagc 124
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 264 aataaaccaaggttctgtatggccaaataaataagtattctgagaaactacgaaggcagc 323

                                                                       
Query: 125 cctgggaattgggttcagaatttggtcctgactccctgtctggatgtatttttatcaaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cctgggaattgggttcagaatttggtcctgactccctgtctggatgtatttttatcaaac 383

                                                                       
Query: 185 tgacatcctgacagtcaggatgaatgaaagattccccaaagtgaacatcatggaaggaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgacatcctgacagtcaggatgaatgaaagattccccaaagtgaacatcatggaaggaag 443

                                                                       
Query: 245 aaggcaggaggcttgactatgtggaatgcatatactctgagagagaaaagtaagtcagaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaggcaggaggcttgactatgtggaatgcatatactctgagagagaaaagtaagtcagaa 503

                                                                       
Query: 305 gcagaaaaatcaaaaagctatccagggacttgcaaatggaagctctgagttacagctcat 364
           |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 504 gcagaaaaatcaaaaagctatccagggagttgcaaatggaagctccgagttacagctcat 563

                                                                       
Query: 365 ggccacacacggaacaggacatttatgatgctcactagacagagctcaggagaagggtgg 424
           ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggccacagagggaacaggacatttatgatgctcactagacagagctcaggagaagggtgg 623

                                                                       
Query: 425 caagcaggagctgttggattggataatgacagatactaatcaattggaaagccaaacatg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 caagcaggagctgttggattggataatgacagatactaatcaattggaaagccaaacatg 683

                                                                       
Query: 485 aaatctaggatctgatacctagttgaaaaagattgtaatg-gaatgagaaaataaagtca 543
           || |||||||||||||| |||||||||||||||||||| | |||||||||||||||||||
Sbjct: 684 aactctaggatctgatatctagttgaaaaagattgtaa-gagaatgagaaaataaagtca 742

                                                                       
Query: 544 atattttaaaaattatttgaaaaccagaaaggcattcattattttatcctttgcagaata 603
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 743 atattttaaaaattatttgaaaaccagaaaggcactcattattttatcctttgcagaata 802

                                  
Query: 604 gttcaatcatggggagacaggag 626
           ||||| |||||||||||||||||
Sbjct: 803 gttcagtcatggggagacaggag 825


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1025
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1015
Effective search space:   625240
Effective search space used:   625240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)