BAC Information

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BAC

Clone NameMSMg01-154H12
Chromosome13 (Build37)
Map Location 24,397,236 - 24,397,722
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16
Downstream geneLOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154H12.T7 (MSMg01no154_h12.b1)MSMg01-154H12.TJ (MSMg01no154_h12.g1)
ACCAG355753AG355754
length711710
length of high quality
(start - end)
486 (66 - 551)573 (72 - 644)
definitionCHROMAT_FILE: MSMg01no154_h12.b1 PHD_FILE: MSMg01no154_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:06 2005CHROMAT_FILE: MSMg01no154_h12.g1 PHD_FILE: MSMg01no154_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGTCATTCCACCAGACAATCTAAGCATTCGTTTACTATATAAAAGCA
AAGCACAGCAGAAATTGGAGCAAGCTATCTCAAAGAGGGTGCGAGACAGC
ACAGTGCGTTCTGCATATAGGATTTTAAAGAAGTGTTTGTAAGTATTTGT
CAGATGGGTAGCATATTCATGGAGTAAGGTGACCTGTTTTTCCTTCCAAA
TCTCCATGGTCCAGATCTCTCCTTGGGAGTATTTCCTCCCAAGGTCTTTT
GAAGACCAGACCCTTTGTTAGTGCACAAGTGTGGGAGAACGCCCTGGAGC
CTTTGCTTTTGATACAGTGGGAATGAGTTATCCTCAGCCCCAAGGGCATT
TTACCATAAAAGGGCCTTCTGACTGTCAGGAGACACAGCCAGCAGCTTGT
CTCCCTCATATCTGACTCTTACGAGATGCTCAAGGTTCCGTGACTGCTCT
CGTGGCTCTTTCAGTTAAGTTTTGTTGCCCCACGATTAGGACATTCTGCT
AGCTGTAGCTGATGTTTTACAGCACAGGCTGCTGCTGGGGTTTAACAATA
GAGTATCAGGCTGCCCAAGCATGATAGATGACTTAAGCCATCATCGGGAC
TCTCTTATCACCTTCCACCCTCTTCCTTTCATACCCTCTAATAACCCAGA
CTCTATTCTGG
ATTGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGTGGGAATGCACAGCATAAGGAGAAAAT
CAGAAGGAAAGGTGAGGGGGATCCAGTCCTAGGCTCAAGAAGATAAAAAG
CTTAAAGAAAAGTCTGATGCTAGTTGGAATAAAGGGAGTGGTGACCTCAG
GGCAAGACCCCATTCAAGTAAGCTTCCAACTCTAAAGGAATCAGAGGGGA
GCTTCAGAAGTGATAGAGAGCAACAACAGAAAGCAGATACAGACAGTCGA
AGGAGGGGCCGAGGTCCGTCCTACCTCGCAGCAGAACGTGGCAGCTTCAG
CTACATGGTTCTGGCTTTAGAGTCAAGGATATAAGAAAGGGTTGTGGAAT
CTCCTGCTGCAGCTAGGGAAAGCAGCTGAGGCCAGGCATGTATCAGGGGT
GTTCCCGCATGGTGATCCAGAGAGGCCATCGTGTGAAGCCGTGAGGATGA
AGCCCAGCTGCTTTTAGGTCTTGTATTCTTTAGTCTGCTGTCTCCTCACC
ATGGTCCCTTTCCTCTCCTTTGGGATGGTCATGGATAGTCTGTACCACCA
TATGTTGGAAGTTTGTGATTTGCAGTTTGATTTTGATTTTATAGTGCGTT
ACTGTTAATGGTGGTTATGAATCGCACAAAAAACTTATGAGTTTTAAACC
ATGTTGGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_h12.b1 MSMg01no154_h12.b1 CHROMAT_FILE:
MSMg01no154_h12.b1 PHD_FILE: MSMg01no154_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:06 2005
         (486 letters)



>mm_chr13_24397036_24397922
          Length = 887

 Score =  903 bits (467), Expect = 0.0
 Identities = 482/487 (98%), Gaps = 1/487 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agacaatctaagcattcgtttactatataaaagcaaagcacagcagaaattggagcaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agacaatctaagcattcgtttactatataaaagcaaagcacagcagaaattggagcaagc 260

                                                                       
Query: 61  tatctcaaagagggtgcgagacagcacagtgcgttctgcatataggattttaaagaagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatctcaaagagggtgcgagacagcacagtgcgttctgcatataggattttaaagaagtg 320

                                                                       
Query: 121 tttgtaagtatttgtcagatgggtagcatattcatggagtaaggtgacctgtttttcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgtaagtatttgtcagatgggtagcatattcatggagtaaggtgacctgtttttcctt 380

                                                                       
Query: 181 ccaaatctccatggtccagatctctccttgggagtatttcctcccaaggtcttttgaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaaatctccatggtccagatctctccttgggagtatttcctcccaaggtcttttgaaga 440

                                                                       
Query: 241 c-cagaccctttgttagtgcacaagtgtgggagaacgccctggagcctttgcttttgata 299
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgcagaccctttgttagtgcacaagtgtgggagaacgccctggagcctttgcttttgata 500

                                                                       
Query: 300 cagtgggaatgagttatcctcagccccaagggcattttaccataaaagggccttctgact 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagtgggaatgagttatcctcagccccaagggcattttaccataaaagggccttctgact 560

                                                                       
Query: 360 gtcaggagacacagccagcagcttgtctccctcatatctgactcttacgagatgctcaag 419
           |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 561 gtcaggagacacagccagcagcttgtctccctcatatctgacccttatgagatgctcaag 620

                                                                       
Query: 420 gttccgtgactgctctcgtggctctttcagttaagttttgttgccccacgattaggacat 479
           ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttccatgattgctctcgtggctctttcagttaagttttgttgccccacgattaggacat 680

                  
Query: 480 tctgcta 486
           |||||||
Sbjct: 681 tctgcta 687


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 887
Length adjustment: 10
Effective length of query: 476
Effective length of database: 877
Effective search space:   417452
Effective search space used:   417452
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)