BAC Information

Click to search

BAC

Clone NameMSMg01-155J16
Chromosome13 (Build37)
Map Location 60,498,348 - 60,566,870
singlet/doubletdoublet
Overlap genenone
Upstream geneAgtpbp1, Mak10, Golph2, 4921517D22Rik, 1700013B16Rik, EG238662, 4932411G14Rik, Isca1, Zcchc6, LOC100041267, Gas1, EG328264
Downstream geneDapk1, LOC218274, BC051665, 2310051M13Rik, 4930486L24Rik, Tpbpb, Ctla2a, Tpbpa, Ctsj, Ctsq, Ctsr, Cts6, Cts8, Cts8-ps, LOC435362, Cts7, Cts7-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155J16.T7 (MSMg01no155_j16.b1)MSMg01-155J16.TJ (MSMg01no155_j16.g1)
ACCAG356567AG356568
length717743
length of high quality
(start - end)
380 (44 - 423)509 (78 - 586)
definitionCHROMAT_FILE: MSMg01no155_j16.b1 PHD_FILE: MSMg01no155_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:32 2005CHROMAT_FILE: MSMg01no155_j16.g1 PHD_FILE: MSMg01no155_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,566,491 - 60,566,870)(60,498,348 - 60,498,856)
sequence
ATACCTTTCGAAAGAGGATCCGCGGAATTCTTGGTTCTGACCGCACTTAT
CCAATTATCCAGCAACATCAGTGGGCACACTGTCCACCTGTCTTTTTATT
ATCTGGCCTCGGAGCAAATAAAATTACCGAGGGCCCAGTTCCCTTCTTGC
AAAGCACTGGTTTCTTTTAATTATATTTTTTTCCCCAAGTGCCAGAATGG
ACAGAGAGTAGCCACCTAAGCATCAAGTGTATGACCACAGGGAAGCTCAA
GCAGATGCTGCTGACAATGCCTCATCTTTCCAAGTGGCCTATGAGTGTCT
GCGAGCATTCCTATTGTAGCTCATGTTTGCTGGAGCAGTTGTTATGGGTC
TGTGTAGGAAGAATTCTGGTGAGGAACCGGGTTTCAGTACTCCCAGAACT
GTGCCCCGTGTCCTTAAGTGCATGGTGAGATGTGCAAGCTCAGGCCTGTT
GTACAAGAAGGCTGCTATGACTCAGTGCTTGGAAACAGAGGAACTGTCCA
GTATGGTACAGATGCCAAGATTCCTGCTGTAAAGGGCCTTCTGATTCTAG
ATCGACCTTAGTAGCTGTCCTCCCGCATGGGATGCGCAGGAGTTCCCCTG
AGAGTCTCCTCCCGAAAGCCCAGCCTGGCCCGGTGTTCCCCCACTCTTCT
AGTCTAGGGTTTACCGCTGTGAACCCACACCTTGACCACCGCCCCCCCCT
ATACCGACCATATCTTA
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTTGGAAAAGCGATGAGCCATA
GTAGTTGGAAGCCGTTACTCACTCCCAGAGGCTGAGTTTCAGAAGCCCAA
CATTATGTAGGAATCTGTGGGAGACATATCCAGAGGGAAGGTAGAATTGT
GGGTGCTCTGTCTGCTGTTCTGATTGGACTGTTGATATCTAGGGCTCTCT
GGAGCCCCAGATTCTGTACATCAGAGGAAAGAGACCTGTTAAGTAGGTTC
ATTTCCCAGGAATACTGTTGAATGTTGAGCTACAGAAAGAGCCCTTTGCT
GAGAGGACTATGGAAGGCAGCAACTGGCCTGCTTCCTTCATAGAAGAAAC
AAGATCTGGAGCAAAAGGATTTTCCTAGGAGAAAAATGTCCTAACATCCT
CTATCCACTGGGAAACTTTGTCAACACCTACAACATCTCGTTTGATATGT
GGCCTCCAAAATTAATGACTTTTAAGATCAACTGGTAAGTCAAGGGCTAC
CTCACCCTACCCCTACCCAGTTCTACTACTATTCCCTCCATTCTACGACA
CTGTTGCCTACACCCTAGTCAGACTGTGCCCCTCACCCGACGGCTTCTCT
CTCAGATGCTTTCTAGTAGGGCTTCAAGAATGATCCCTCCAAGTGTTCCT
TTTTATTTAGCCACCGGATGAAACACATAAAGTGCCCTCCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_j16.b1 MSMg01no155_j16.b1 CHROMAT_FILE:
MSMg01no155_j16.b1 PHD_FILE: MSMg01no155_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:32 2005
         (380 letters)



>mm_chr13_60566291_60567070
          Length = 780

 Score =  673 bits (348), Expect = 0.0
 Identities = 372/380 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacttatccaattatccagcaacatcagtgggcacactgtccacctgtctttttattatc 60
           ||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 580 cacttatacaattatccagcaacatcagtgggcgcactgtccacctgcctttttattatc 521

                                                                       
Query: 61  tggcctcggagcaaataaaattaccgagggcccagttcccttcttgcaaagcactggttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tggcctcggagcaaataaaattaccgagggcccagttcccttcttgcaaagcactggttt 461

                                                                       
Query: 121 cttttaattatatttttttccccaagtgccagaatggacagagagtagccacctaagcat 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 460 cttttaattatatttttttccccaagtgccagaatggatagagagtagccacctaagcat 401

                                                                       
Query: 181 caagtgtatgaccacagggaagctcaagcagatgctgctgacaatgcctcatctttccaa 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 400 caagtgtatgaccacagggaagctcaagcagatgcttctgacaatgcctcatctttccaa 341

                                                                       
Query: 241 gtggcctatgagtgtctgcgagcattcctattgtagctcatgtttgctggagcagttgtt 300
           |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 340 gtggcctaggagtgtctgcgagcattcctgttgtagctcatgtttgctggagcagttgtt 281

                                                                       
Query: 301 atgggtctgtgtaggaagaattctggtgaggaaccgggtttcagtactcccagaactgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 atgggtctgtgtaggaagaattctggtgaggaaccgggtttcagtactcccagaactgtg 221

                               
Query: 361 ccccgtgtccttaagtgcat 380
           |||| |||||||||||||||
Sbjct: 220 ccccatgtccttaagtgcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no155_j16.g1 MSMg01no155_j16.g1 CHROMAT_FILE:
MSMg01no155_j16.g1 PHD_FILE: MSMg01no155_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:32 2005
         (509 letters)



>mm_chr13_60498148_60499056
          Length = 909

 Score =  977 bits (505), Expect = 0.0
 Identities = 508/509 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttggaaaagcgatgagccatagtagttggaagccgttactcactcccagaggctgagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttggaaaagcgatgagccatagtagttggaagccgttactcactcccagaggctgagt 260

                                                                       
Query: 61  ttcagaagcccaacattatgtaggaatctgtgggagacatatccagagggaaggtagaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcagaagcccaacattatgtaggaatctgtgggagacatatccagagggaaggtagaat 320

                                                                       
Query: 121 tgtgggtgctctgtctgctgttctgattggactgttgatatctagggctctctggagccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgggtgctctgtctgctgttctgattggactgttgatatctagggctctctggagccc 380

                                                                       
Query: 181 cagattctgtacatcagaggaaagagacctgttaagtaggttcatttcccaggaatactg 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagattctgtacatcagaggaaagagacctgttaagtaggttcatttcccaggaatactg 440

                                                                       
Query: 241 ttgaatgttgagctacagaaagagccctttgctgagaggactatggaaggcagcaactgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgaatgttgagctacagaaagagccctttgctgagaggactatggaaggcagcaactgg 500

                                                                       
Query: 301 cctgcttccttcatagaagaaacaagatctggagcaaaaggattttcctaggagaaaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctgcttccttcatagaagaaacaagatctggagcaaaaggattttcctaggagaaaaat 560

                                                                       
Query: 361 gtcctaacatcctctatccactgggaaactttgtcaacacctacaacatctcgtttgata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcctaacatcctctatccactgggaaactttgtcaacacctacaacatctcgtttgata 620

                                                                       
Query: 421 tgtggcctccaaaattaatgacttttaagatcaactggtaagtcaagggctacctcaccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtggcctccaaaattaatgacttttaagatcaactggtaagtcaagggctacctcaccc 680

                                        
Query: 481 tacccctacccagttctactactattccc 509
           |||||||||||||||||||||||||||||
Sbjct: 681 tacccctacccagttctactactattccc 709


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)