BAC Information

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BAC

Clone NameMSMg01-157H14
Chromosome13 (Build37)
Map Location 51,137,385 - 51,137,691
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676907, LOC667546, LOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17, Gm806, EG639044, Gm904, LOC100040315, EG667693, LOC100040161, LOC100040190, EG667712, LOC676997, EG667717
Downstream geneSpin1, 4930519N16Rik, EG667728, LOC667733, Ppia-ps13_636.1, LOC625524, Edg3, Shc3, Cks2, Secisbp2, Sema4d, Gadd45g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157H14.T7 (MSMg01no157_h14.b1)MSMg01-157H14.TJ (MSMg01no157_h14.g1)
ACCAG357946AG357947
length711714
length of high quality
(start - end)
310 (42 - 351)282 (73 - 354)
definitionCHROMAT_FILE: MSMg01no157_h14.b1 PHD_FILE: MSMg01no157_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:49 2005CHROMAT_FILE: MSMg01no157_h14.g1 PHD_FILE: MSMg01no157_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGTAGCCAGAGCCTTTTAAAACCCTGGTAACAAGCTGTGATGGTATCCA
ACTTCCCTTCATCCACCCTGCCCCCAGACTCTAGTGACTGCTCTCCCACA
CATGGGTAGGCTACTTTTTAATTTCTACATAAGAAAGCGTGTGTGGTATT
TGTGTTGGTGTACAGACAATTCCACTGGCCTGCTCTTAGGGACCCAGCAA
TTGCAGAGCCCTAAGGGCAGAGCAAGGGATCAGAGAGGGGGCTTGTGCAG
AGAACAAAGAGCAGCTGAAGTAGCTGGTGGTCCCTATTATCTGCAGGACA
CCTTTTTTTTCCTGCCGCCCCGCTCCAGGTAACGGTAGCTGTGCCTCTGA
GGTAAACTGCACCCCTGGTCTATGTGCCCAGAACCTTTCTGGCCCTGTAC
AGTTGTCATAAGATATTTAGTTGTGACGATATTATAAACAAGAAATGTAC
AAATTCCCTAGATGATTCGCTTGAGTCAGAATGCTTTTTTGTTGTTGTTG
CCGTTTTAGCCCAGGCTAGCATCAAACTTGCTAGCTCCCACTTCTGCCTA
CAACTGTTGAGAGTTTAGGCATCTTCTACTATACCTCACTTAACATGATG
GCTCCTTTGGTTGATTATGCAGGTAATTTGGTTTTCGAGGGTGGGTTCTC
CTCTTAACCTT
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCCTCTGAGGAAACAGACTGGGAGGAAG
AAGCAGCTCATTACCAGCCAGCTAATCGGTCAAGAAAAAAGCCAAAAGCG
GCTGGCGAAAGCCAGCATGCTGTTCAGCCTCCGGGCAGTCGGCTTCAAGG
TCCGCCCTATGCGGAGCCCCCGCCCTGCGTAGTGCGTCAGCCCTGCGCAG
AGAGGCAATGCGCAGAGAGACAATGCGCAGAGAGACAATGCGCAGAGAGG
CAATGCGCAGAGAGACAATGCGCAGAGAGGCAATGCGCAGACTCATTCAT
TCCCTTAGTGGCTACCCCCACCCCCCCCACAAGCATTTCCGGTCTTTGAA
GGAGCCGAGGGTGGCCGTGTCAAAGATCCGGTAGAATACGTGCAGATTAA
AGAACTCGCCGAGTCGGTCCGTAAATACGGAATCAATGCTAATTTTACCT
TGGTGCAGTTAGACAGGCTTGCCGACATGGCACTAACTCCTGCCGACTGG
CAAACGATTGTAAAAGCCGCTCTCCCTAGTATGGGCAAATATATGAAATG
GAGAGCGCTTTGGCACGAAGCTGCACAAGCGCAGGCCCGAGCAAACGCAG
CTGCTTTGACTCCAGAGCAGAGAGATTGGACTTTTGACTTGTTAACGGGT
CAGGAAGCTTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_h14.b1 MSMg01no157_h14.b1 CHROMAT_FILE:
MSMg01no157_h14.b1 PHD_FILE: MSMg01no157_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:49 2005
         (310 letters)



>mm_chr13_51137182_51137891
          Length = 710

 Score =  578 bits (299), Expect = e-169
 Identities = 305/307 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagtagccagagccttttaaaaccctggtaacaagctgtgatggtatccaactt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagtagccagagccttttaaaaccctggtaacaagctgtgatggtatccaactt 263

                                                                       
Query: 64  cccttcatccaccctgcccccagactctagtgactgctctcccacacatgggtaggctac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cccttcatccaccctgcccccagactctagtgactgctctcccacacatgggtaggctac 323

                                                                       
Query: 124 tttttaatttctacataagaaagcgtgtgtggtatttgtgttggtgtacagacaattcca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttttaatttctacataagaaagcgtgtgtggtatttgtgttggtgtacagacaattcca 383

                                                                       
Query: 184 ctggcctgctcttagggacccagcaattgcagagccctaagggcagagcaagggatcaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 384 ctggcctgctcttagggacccagcaattgcagagccctaagggcagagcaaggaatcaga 443

                                                                       
Query: 244 gagggggcttgtgcagagaacaaagagcagctgaagtagctggtggtccctattatctgc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 444 gagggggcttgtgcagagaacaaagagcagctgaagtagctggtggtcccttttatctgc 503

                  
Query: 304 aggacac 310
           |||||||
Sbjct: 504 aggacac 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)