Query= MSMg01no157_l04.b1 MSMg01no157_l04.b1 CHROMAT_FILE:
MSMg01no157_l04.b1 PHD_FILE: MSMg01no157_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:05 2005
(319 letters)
>mm_chr13_5824118_5824837
Length = 720
Score = 520 bits (269), Expect = e-152
Identities = 296/315 (93%), Gaps = 17/315 (5%)
Strand = Plus / Plus
Query: 5 gaattctttaaagaaagtcaaagtaatgttctctaatagtcagctaaagccaaggttacc 64
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 gaattctttaaagaaagtcgaagtaatgttctctaatagtcagctaaagccaaggttacc 280
Query: 65 tttaaaatgttttgttttgttttgttttgttttgttttgttttgttttgttttcttaatt 124
|||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 281 tttaaaatgttt----------------gttttgttttgttttgttttgttttcttaatc 324
Query: 125 tcctcttactacacagtagaacagcagtggccagttaaaaagcatcctgaaatttatatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcctcttactacacagtagaacagcagtggccagttaaaaagcatcctgaaatttatatt 384
Query: 185 ttcagg-tcctggtgggcagaaggtgttggcatggagcctagggctttactctgatttta 243
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttcagggtcctggtgggcagaaggtgttggcatggagcctagggctttactctgatttta 444
Query: 244 acaggtttcgagacaccagagcctccagagaagtactttgtggaggcaaagcaggccagg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acaggtttcgagacaccagagcctccagagaagtactttgtggaggcaaagcaggccagg 504
Query: 304 tccacagctaatcaa 318
|||||||||||||||
Sbjct: 505 tccacagctaatcaa 519
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 720
Length adjustment: 9
Effective length of query: 310
Effective length of database: 711
Effective search space: 220410
Effective search space used: 220410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no157_l04.g1 MSMg01no157_l04.g1 CHROMAT_FILE:
MSMg01no157_l04.g1 PHD_FILE: MSMg01no157_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:05 2005
(292 letters)
>mm_chr13_5968595_5969287
Length = 693
Score = 559 bits (289), Expect = e-164
Identities = 292/293 (99%), Gaps = 1/293 (0%)
Strand = Plus / Minus
Query: 1 aatttttttgacatctttctgtt-atactaagtggggaatggatggtgactgtattggag 59
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 493 aatttttttgacatctttctgttaatactaagtggggaatggatggtgactgtattggag 434
Query: 60 gacctgaagtggcttgttgagcacctcattttgccatgtggttaggatagtactgagcaa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gacctgaagtggcttgttgagcacctcattttgccatgtggttaggatagtactgagcaa 374
Query: 120 acaggactctggtaaaaatttatatactgacaaaacaggattagtttcctggatgttcta 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 acaggactctggtaaaaatttatatactgacaaaacaggattagtttcctggatgttcta 314
Query: 180 aacatagttttgtccccctttatattacttttctaaattcatttgttgcacaaatcattt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aacatagttttgtccccctttatattacttttctaaattcatttgttgcacaaatcattt 254
Query: 240 caaatcttagttcaactcctataaaacacatacacacatgcaagcaaacattc 292
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 caaatcttagttcaactcctataaaacacatacacacatgcaagcaaacattc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 693
Length adjustment: 9
Effective length of query: 283
Effective length of database: 684
Effective search space: 193572
Effective search space used: 193572
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
