BAC Information

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BAC

Clone NameMSMg01-158E13
Chromosome13 (Build37)
Map Location 69,343,343 - 69,343,579
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666238, EG666245, EG666272, LOC100042223, Mtrr, LOC100042233, Fastkd3, 1700001L19Rik, Adcy2, LOC666205
Downstream geneLOC218332, Pols, A530095I07Rik, Srd5a1, Nsun2, LOC100042260, 3110006E14Rik, 4930547H16Rik, Med10, EG620143, LOC100042291
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158E13.T7 (MSMg01no158_e13.b1)MSMg01-158E13.TJ (MSMg01no158_e13.g1)
ACCAG358539AG358540
length699768
length of high quality
(start - end)
239 (115 - 353)278 (66 - 343)
definitionCHROMAT_FILE: MSMg01no158_e13.b1 PHD_FILE: MSMg01no158_e13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:47 2005CHROMAT_FILE: MSMg01no158_e13.g1 PHD_FILE: MSMg01no158_e13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACAA
ATAGCAAAAATACTACTGGAATTCCATTTGAAAGCTTGTGAGATGCTTCA
GGGTATTCTAGTCCCAAAAGAAGGGTAACTCCAATGGCCCCTGGTTAAAG
GGGACAGATCGTTGTCTGGTGATTGCCAATGGGCAATGCTTTTATCATTC
TTCTTTCAGAGTAGAGTCCAACCCTGAGCCCTTTGAGTCAGGGAGGTGAG
CTGTTAAAGAATACCAGGAATGGTGGCTCACAACCATCCGTAATGAGATC
TGACTCCCTCTTCTGGAGGGTCTGAAGACAGCTACAGTGTACTTACATGT
ATTATATGACTACCCAACTCTTAAAAAAAAAAGAATACCAGGAAAGAGAT
GCTAACCCCCCCCCAATGAAAGCACATTTGCCAAACAAGATAGTGGTTCC
TTCCCCTGTATGAGCGGATCTGGAGAGATAAACATCTTGTCTCTCAAAGT
AGCCCTGTAGAGGAGCCTGAAGAGGAAGCTGTGGAGTGAGCATAGAGGGT
AGTTATAGACAGGCAGACAGGCAGGCTTAGCATTCTCTGCATTTGGTAGG
ACTTATGATATAGTTGCCTATGGTGTGTGTGTGTGTGTGTGTGCGTGCTT
CTCTCTTCCCCTCTTATCTTCCCGTTTACCCTTTATTCTTCCTTTGCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCTTGCTTAATGATTGATATGAGAAGGCCCAGCTC
TGTGTGGGTGGTGCCACACTTGGGAAGGAGTATAGAGAGAAAGTACAGCA
AGCGAGCCATGGAGAACAAGACGGTAATCAGTGTTCTTTCACAGTCTCTG
CTTCTCTTCCTGCCTTGAGTATCTGCTCTGGCTTCCCCCAGTGATGGAGT
CAGATCTGAGAGTTTTAAGAAAAAACCCTTTTCCTCCCCAAGTTACTTTA
AGTCCTGGTTGGTTGGTTGGTTGTTGTTGTTGTTGTTGTTGNTANTTTTT
TTTTTTTTCCCCCCCCCCCCCCCTTAATATTTTTATATATTTTATTATTT
TTTTTTTTCCCCCCCCAAAAAAAAAAAAAAATACGGGGGGGGGTGTTTTT
TTTTTTCCATTTATCCTCTTTATTTTTATTCTTATCTTCGTTCTCCTCTA
CCTTTCTATTCTCTCATTCTATTTTCTTCTCATTAACTCCATTTCTTCTT
ATCTCTCTTTCTTCTTCCTTATCTTTTTCATCATCCTCACCTTTTAGTTT
TTTTATAAATCTTCTCCGTTCTCTATTTTTCTCTTCTTTCACTTCATACC
TCTATTTCTCTTACTGCCGCTACCATTACTCTTTATCACATTATTCTCTT
ATCCCCTATATATACTTATATTTCCTCGTCTTTCTCTACATTTTTACCTA
TTATTTCTCTTTTTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_e13.b1 MSMg01no158_e13.b1 CHROMAT_FILE:
MSMg01no158_e13.b1 PHD_FILE: MSMg01no158_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:47 2005
         (239 letters)



>mm_chr13_69343225_69343863
          Length = 639

 Score =  458 bits (237), Expect = e-133
 Identities = 237/237 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaagaagggtaactccaatggcccctggttaaaggggacagatcgttgtctggtgatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 caaaagaagggtaactccaatggcccctggttaaaggggacagatcgttgtctggtgatt 296

                                                                       
Query: 61  gccaatgggcaatgcttttatcattcttctttcagagtagagtccaaccctgagcccttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gccaatgggcaatgcttttatcattcttctttcagagtagagtccaaccctgagcccttt 236

                                                                       
Query: 121 gagtcagggaggtgagctgttaaagaataccaggaatggtggctcacaaccatccgtaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 gagtcagggaggtgagctgttaaagaataccaggaatggtggctcacaaccatccgtaat 176

                                                                    
Query: 181 gagatctgactccctcttctggagggtctgaagacagctacagtgtacttacatgta 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 gagatctgactccctcttctggagggtctgaagacagctacagtgtacttacatgta 119


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)