BAC Information

Click to search

BAC

Clone NameMSMg01-158I10
Chromosome13 (Build37)
Map Location 94,558,158 - 94,558,433
singlet/doubletsinglet
Overlap geneArsb
Upstream geneThbs4, EG624619, EG218444, Papd4, LOC100039163, Homer1, Jmy, EG619883, Bhmt, Bhmt2, Dmgdh
Downstream geneCycs-ps3, Lhfpl2, Scamp1, LOC435378, ENSMUSG00000042857, Ap3b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158I10.T7 (MSMg01no158_i10.b1)MSMg01-158I10.TJ (MSMg01no158_i10.g1)
ACCAG358717AG358718
length786737
length of high quality
(start - end)
281 (32 - 312)33 (60 - 92)
definitionCHROMAT_FILE: MSMg01no158_i10.b1 PHD_FILE: MSMg01no158_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:04 2005CHROMAT_FILE: MSMg01no158_i10.g1 PHD_FILE: MSMg01no158_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTCTTTGTG
TGTATGAACATGTTTGTATGTGTGTGCCCATGTGTCTATGCATGTGTGTA
TATGTGAGTACAGAGGGGCTTTTCCCTAGAAATGATAAAATCCCTCCCAT
TCCGAGGTGCGTCCAGAAAGAGATGGCATATTCAAATTAGAGTATTCAAA
TCAGGGTATATTAGAGAGGGTTCATTTGCAAAGGTGACTTTTTTTCAGAA
GATGTGAATGTGAGCAGGGGCAGAAAGCGTAGTGGAGAGGAACAGCAGAG
CGGTTACCACCCCTATACCAGTAAGGGGGGATGGGAGGTATAAGATGATT
TTTTTTTTTTTCCCCCCCCCCCCCCCTTGTTTCTTTTCAATGTATGTTTT
TCTTTTTTTCCCCCCCCCAAATAAATAAAAAAAACCTTGCTTGGGGGCGG
TGGTTTTTTTTTCCCCCCCCTTCTCCCTTTCCCCATTTTATTTCTAACTC
TTTTCTTCTTTTTCTATTTCTTATTTTAATTTATTCAGTCCTGACTTGTC
TTTTTATCTCCTACCTTCCCTTTTCACCTTATTCACCGTTGTTTTTCTTT
TCTCTTCTTCTCCCTTTATTTTATTTCTCCTATGCTTATTCCCCTATTTT
TAATACTTTCTCATTCCCCATACAATACGTAATTCTACTACCCCCGCTCC
ATCACCACCCTCTCAATCTTCTATTCTAATTTTCTCACCTGTCCTCCTAG
ATCCCCACATTACCCCATATTCCCCTCCTCCCCACG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCCCTTAGGGAGCTCATGTTGGGAAAGAAAAGGCTGAAGCCT
GGGGCTAGCCAAAGGAAAACTGTGTCTCCCAAAAAAAAAATTCCACGCAG
TTCTAACAACTTGCCAAACCACTCTGCAGGGTAAGCGGAAAACCCAGCCA
ATGATGAATGAGTCAGGGGGGGCCGGGGCCACACCTTGACCAGAAATGCT
TAGTTATGCTTGCCTCTGGCCCCCTGTTTAAACTCTAAGGTAACTTTGGA
AACCTAAAAATGTAGGGAAGGAAGTGACTGGCTTTTTTGTCCCTTTCTTT
TTTTTTTCCACCTCCCCCCCACCTCCCTAATCCTTCCCGGCCAAACCCTT
GCCACCCCCACTTTTAACATAATTCCTCTCTTTCAGTTGGACTTCTCCAA
AACAGGAAGCCAAACATGTCGTCTTAATTGTACAGATTGTGACCCCTATA
TTGATAAAAAGTGCCCCTATCTGGGTAAACACGGGAAACTTTAAATTGAA
GGGGTCTCCTGAAGGGAAGTAAGTTTGGGGCACAATGGCCCTTTGAGGCG
GGCGTTCTGAACCTTGTTAATCCTCTTTCCTGGTTTTTTGGGGTTCACCG
TAATCTGGATATTTTTTCCCTTTTGTCTCTACATTCCTGTTCCATCCTCC
AAGACCCTGTTTCTCACCCTCCTTTCGTGGATCTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_i10.b1 MSMg01no158_i10.b1 CHROMAT_FILE:
MSMg01no158_i10.b1 PHD_FILE: MSMg01no158_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:04 2005
         (281 letters)



>mm_chr13_94557954_94558633
          Length = 680

 Score =  497 bits (257), Expect = e-145
 Identities = 272/277 (98%), Gaps = 1/277 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctctttgtgtgtatgaacatgtttgtatgtgtgtgcccatgtgtctatgcatgt 64
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 205 gaattcctctttgtgtgtatgaacatgtttgtatgtgtgtgcccatgtgtttatgcatgt 264

                                                                       
Query: 65  gtgtatatgtgagtacagaggggcttttccctagaaatgataaaatccctcccattccga 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtgtatatgtgagtgcagaggggcttttccctagaaatgataaaatccctcccattccga 324

                                                                       
Query: 125 ggtgcgtccagaaagagatggcatattcaaattagagtattcaaatcagggtatattaga 184
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 325 ggtgcgtccagaaagagatggcatattcaaattagagtattcaa-tcagggtatattaga 383

                                                                       
Query: 185 gagggttcatttgcaaaggtgactttttttcagaagatgtgaatgtgagcaggggcagaa 244
            ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 384 aagggttcatttgcaaaggtgactttatttcagaagatgtgaatgtgagcaggggcagaa 443

                                                
Query: 245 agcgtagtggagaggaacagcagagcggttaccaccc 281
           |||||||||||||||||||||||||||||||||||||
Sbjct: 444 agcgtagtggagaggaacagcagagcggttaccaccc 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 680
Length adjustment: 9
Effective length of query: 272
Effective length of database: 671
Effective search space:   182512
Effective search space used:   182512
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)