BAC Information

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BAC

Clone NameMSMg01-159E13
Chromosome13 (Build37)
Map Location 103,225,503 - 103,225,813
singlet/doubletsinglet
Overlap genenone
Upstream genePik3r1
Downstream geneCd180, Mast4, EG621312, EG432800, LOC432801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159E13.T7 (MSMg01no159_e13.b1)MSMg01-159E13.TJ (MSMg01no159_e13.g1)
ACCAG359266AG359267
length748745
length of high quality
(start - end)
319 (44 - 362)288 (74 - 361)
definitionCHROMAT_FILE: MSMg01no159_e13.b1 PHD_FILE: MSMg01no159_e13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:59 2005CHROMAT_FILE: MSMg01no159_e13.g1 PHD_FILE: MSMg01no159_e13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTACCTCAGAGATTCTGTACCTCACTCTCCTGCCTGAAAGGCTATTT
CATCTCATATCTTTGTGTCTATTTGGACACCATTGTTAATTTATATAAAG
ATACTATGCTTTATAGTTGTGCCCACCTGGTAACTATTTCCTTACTGTCT
CTAAACTTAATTAATTCCTGCCTCTTTGCTCTGCTCCGCTCCAGGTGTGT
GGGGAGGCTGCCTGCTTTGTGCACTGCTATGTCAGGCACCAAGCAGGTCT
CCATACACGGTTGTTCAATGGATGAATAGACGTGCATAACAGTCTAGGGC
AGTGCTTATTTATTCCCCTGCCCCTCCCCAACCGAGGTCAACACTCAGAA
CAATATGATGCTTCCCCCACCTTAAGGAAAAACAAAAAGCAAACCCCAGA
GAGCTTTTTTTAAAAAATGATTTTACAAATAAGGTGTGCATTATAAACAT
ATCTTTCCTAACATTTGGATTAATTTTTTTAAAAAAGAGGTTATTTAGGA
ATAAGTAATGTCTTACCCTGAAGAAATGTTTTTAAGGGGATTTCAGATAT
GCTGGCAGGTTCTACAGGGTGGCAGCTTGGGGCAGAGATCAGTCAGGTTG
CTTGGCCTTGGATTGGGCCTTCTGGCTCCCTCCTGAGCACCCTGGAAGAA
TAGACTATTGCCCCAGCTCACTTGAACGTGAACTGTGCTTAACCCCAN
ATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTATCAATCCTATCAAGTTTGGTACT
TCCTTGTTGAAAGCTTATTAACTATTGATTCAATTTATTTTAATAAGTAT
TGTCCTATAAAAATGATCTATTTCTTCAGATCTAAGTTTTGGTGCTTTTT
TAAACTCAAGAAATTGATCCATTTCGTCTAGATTATTAAATTTGTTGTTA
TAGAATCATTTGTAATATTCTTCCATTGTCTTTTAATGTCTGTATAATCA
ATCCTTATTACACTCCTTTCATGTCTGATATAGGAGTTTATGTTTTATAT
CTAAGCTCGCTTGTTTAGGACCTCATCCCCATTATTGATCTTTTGAAAGA
ACCAGCTTTGGCTCGCCCCATTTTCCCTATTGATTTGTTATTCTGAATTG
ATTTCCACTCTAATTTTAATTATTTCTTTTTTCCCATGAATACATCAAAT
TTAATTCAATCTTTTCCTAGTTTTTTTTTTAAATAGAAACCTAGACATCT
GATTTTTTGATCCTTATCTTTCTCTGATTTGCTAACTTCATGCTAGTAAC
TCTCCTCTGAGTACTGTCTTCAATGTACCGTGTGCATGATAAGCAGTATT
TTAATTTTCTTTTAAATCAAAGTATTTTTAATCTCCCTTAAAACATCACT
GATGTTTGCATTAAATGCGTATTGTCTAATCCTTCAATATTTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_e13.b1 MSMg01no159_e13.b1 CHROMAT_FILE:
MSMg01no159_e13.b1 PHD_FILE: MSMg01no159_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:59 2005
         (319 letters)



>mm_chr13_103225295_103226013
          Length = 719

 Score =  532 bits (275), Expect = e-155
 Identities = 302/311 (97%)
 Strand = Plus / Minus

                                                                       
Query: 9   tcttacctcagagattctgtacctcactctcctgcctgaaaggctatttcatctcatatc 68
           ||||||||| |||||||||||||||||||||||||| |||||||||||| |||| || ||
Sbjct: 519 tcttacctccgagattctgtacctcactctcctgcccgaaaggctattttatctaatgtc 460

                                                                       
Query: 69  tttgtgtctatttggacaccattgttaatttatataaagatactatgctttatagttgtg 128
           ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 459 tttgtgtctatttggacaccattgttaatttatgtaaagatgctatgctttatagttgtg 400

                                                                       
Query: 129 cccacctggtaactatttccttactgtctctaaacttaattaattcctgcctctttgctc 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 cccacctggtaactatttccttactgtctctaaacttaattaattcctgcctctttgctc 340

                                                                       
Query: 189 tgctccgctccaggtgtgtggggaggctgcctgctttgtgcactgctatgtcaggcacca 248
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tgctctgctccaggtgtgtggggaggctgcctgctttgtgcactgctatgtcaggcacca 280

                                                                       
Query: 249 agcaggtctccatacacggttgttcaatggatgaatagacgtgcataacagtctagggca 308
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 279 agcaggtctccatacacggttgttcaatggatgaatggacgtgcataacagtctagggca 220

                      
Query: 309 gtgcttattta 319
           |||||||||||
Sbjct: 219 gtgcttattta 209


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)