BAC Information

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BAC

Clone NameMSMg01-159M02
Chromosome13 (Build37)
Map Location 27,117,152 - 27,117,722
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666221, LOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957
Downstream genePrl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159M02.T7 (MSMg01no159_m02.b1)MSMg01-159M02.TJ (MSMg01no159_m02.g1)
ACCAG359609AG359610
length742799
length of high quality
(start - end)
570 (44 - 613)137 (75 - 211)
definitionCHROMAT_FILE: MSMg01no159_m02.b1 PHD_FILE: MSMg01no159_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:32 2005CHROMAT_FILE: MSMg01no159_m02.g1 PHD_FILE: MSMg01no159_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACTGACATCATATTTTTTTAATTTTACTGATCTGTTTCTTTCCAGGG
CTTTCTAATGACAGCATGTATTGGACAAGGCAAGGATAGGTTCTACTGAT
ATGGTCCACAGGACACACTCTGCAGAGACAGGCAGTGTAATGGAAAAGGG
TGAGCTGGATCAAGGACAGAGCAAGTAACCATGACTGAAGCTCCTATTTC
TAAACTTAAATGAGAATCAATGAAAGAATAAGACCGAGGAAAGTTTAGAC
TAATTTGGATTTATGATATGTGTCAGTGTAAAAGGGAGGAAAATTTGCTT
TGCGCTCCTTTTTTCTGCATATTTAATATTCCAGTTCATTAGGAGTTCAT
CAAGTTTGCTTGAATCCCCACTATTGTTTCTAATGAAATGGAAAAAGAAG
TTGAGCTAATTTACTAGTTAAATGAAATAATGAACTGGCTTAAATTATGT
TTCAAATTTTCTTTCAATACTTAGACTCAATAATTTACCCATGTCAGGCT
TGAATATAAAATAATAATGACAATAACTATAAAATTCCAGTAATTTCCTT
TGTTGTCCAGAAGATTTACATGGCTTTAACCTACTCAGAAACAAGAACTT
AGAAATTAGATAGCAGAAAACAGACCAGAATAAGTATGTTTTCTTTTGCT
TTTATAATTTGGAAATGTAGTCCTGCGATTTCGGTTATTATC
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATCCTACAATTAATAATAGTTTCCC
CAGTTAGGTTCCCTTGTAGAAAGCTAAATATTCACTTACAAATGGTTATC
AATTGGAGATAGTTGATGGGATAGGGATGGTGTCATGGGTTGNTCNCTTC
NCCTTTACCTATNTNGCCCCTTCTGTTCCCCTCCTCTGCTCTTTGCTGTG
CCTGCCGCCTCAGTCCCTGTNCTTTCCTCCGTGTTTCTCCCCCGCCGTTT
TCCTTCCCCTCCTTTCTTTGCTTTTTTCTTTCCCTCCGCCCCTTCACCTC
TTGTTCACTCNTCTTTTTTTTTTCCCCCCCCCCCCCCCCCTAANCGGNTT
TTTGATTTATATTTTTTTTCTCCCCCCCTTTTTTTTAAAAAAACATTTTC
TCCCTCCCCCCGGTTTCTCCCCCCCCCCTCTTTTTTCCCCCCCCCCCCCC
CCCCTCCCTGTTTTTTTTTTTCCCCCCCCCCCCCCCCTCTTTTTATCTTC
TTTTCTTTGCACTCTCTCCTCCTTCTTTTTCCCTATTTTTCCCCCCCCCC
TCCCTGACCCCTGTTCATTCTCTACTTCCCACCCCTACCCCCCCCCCCTC
CTTCTTCTTCTCTTCCCCTTTTATCCCCCCCCCATAAATCCTCCCACTTC
TTTTTCTCCTCTCCCCCCCTATTTTTGTAATTAAATAACCCCTCACTCCT
CCCGCCCTTTTCTCTTTTTTTTTGTCTCTTTTCTTTCTTCCCCCTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_m02.b1 MSMg01no159_m02.b1 CHROMAT_FILE:
MSMg01no159_m02.b1 PHD_FILE: MSMg01no159_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:32 2005
         (570 letters)



>mm_chr13_27116948_27117922
          Length = 975

 Score =  971 bits (502), Expect = 0.0
 Identities = 552/572 (96%), Gaps = 7/572 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactgacatcatatttttttaattttactgatctgtttctttccagggctttcta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 gaattcactgacatcatatttttttaattttactgatctgtttctttccagggctttcta 716

                                                                       
Query: 65  atgacagcatgtattggacaaggcaaggataggttctactgatatggtccacaggacaca 124
           |||||| |||||| |||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 715 atgacaacatgtagtggataaggcaaggataggttatactgatatggtccacaggacaca 656

                                                                       
Query: 125 ctctgcagagacaggcagtgtaatggaaaagggtgagctggatcaaggacagagcaagta 184
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 655 ctctgcagagacaggcagtgtaatggaaaagggtgagctggatcgaggacagagcaagta 596

                                                                       
Query: 185 accatgactgaagctcctatttctaaacttaaatgagaatcaatgaaagaataagaccga 244
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 accatgaccgaagctcctatttctaaacttaaatgagaatcaatgaaagaataagaccga 536

                                                                       
Query: 245 ggaaagtttagactaatttggatttatgatatgtgtcagtgtaaaagggagg------aa 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||      ||
Sbjct: 535 ggaaagtttagactaatttggatttatgatatgtgtcagtgtaaaagggaggaaaattaa 476

                                                                       
Query: 299 aatttgctttgcgctccttttttctgcatatttaatattccagttcattaggagttcatc 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 aatttgctttgcgctccttttttctgcatatttaatattccagttcattaggagttcatc 416

                                                                       
Query: 359 aagtttgcttgaatccccactattgtttctaatgaaatggaaaaagaagttgagctaatt 418
           ||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 aagtttgcttgaatccatattattgtttctaatgaaatggaaaaagaagttgagctaatt 356

                                                                       
Query: 419 tactagttaaatgaaataatgaactggcttaaattatgtttcaaattttctttcaatact 478
           |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 355 tactagttaaatgaaataatgaactggcttaaattatgcttcaaattttc-ttcaatact 297

                                                                       
Query: 479 tagactcaataatttacccatgtcaggcttgaatataaaataataatgacaataactata 538
           || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 296 taaactcaataatttacccatgtcaggcttgaatataaaataataatgacaataacaata 237

                                           
Query: 539 aaattccagtaatttcctttgttgtccagaag 570
           ||| ||||||||||||||||||||||||||||
Sbjct: 236 aaaatccagtaatttcctttgttgtccagaag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 975
Length adjustment: 10
Effective length of query: 560
Effective length of database: 965
Effective search space:   540400
Effective search space used:   540400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)