BAC Information

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BAC

Clone NameMSMg01-159P07
Chromosome13 (Build37)
Map Location 35,105,852 - 35,106,133
singlet/doubletsinglet
Overlap genenone
Upstream geneRipk1, Bphl, Tubb2a, LOC100042686, Tubb2b, 2310047M15Rik, 3110004L20Rik, LOC620132, EG666666, 1300014I06Rik, D0H6S2654E, EG432746, LOC666677, Prpf4b, 4933417A18Rik, LOC666697, 1810022C23Rik, Peci
Downstream geneCdyl, Rpp40, LOC100041568, Ppp1r3g, Lyrm4, LOC100042773
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159P07.T7 (MSMg01no159_p07.b1)MSMg01-159P07.TJ (MSMg01no159_p07.g1)
ACCAG359752AG359753
length754740
length of high quality
(start - end)
239 (122 - 360)287 (76 - 362)
definitionCHROMAT_FILE: MSMg01no159_p07.b1 PHD_FILE: MSMg01no159_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:47 2005CHROMAT_FILE: MSMg01no159_p07.g1 PHD_FILE: MSMg01no159_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTAGGACAGGATGATTTATCACACTGACACACACTGTTGTCACAA
TGACAGTTGATTTTCTTGTCTCCAATTGAGTTCTTGTTATGCTGCTCTCC
TTTCCAAGAATGATGTGGGCAGACAGTTCTTCCAGATAATCCAGGTTTGA
TGTTCAACAACCATAAGATGGCTCACAACTATCTGTTACAGTTCTAGGAG
ATCCAACATTTTCTTCTGGTATTCTTAGAACATCAAACATACAAGTGGTA
CACAGACATACATGCAGACAAAACACCCATAGACCTTTAAGGAAAAGAGA
AAGAAGAATATTTAGAAGAACGACCACGAGGAAGATGAGTATTCTCCTTT
CATTTTGTTGTCCCCCCAAAAAAAAAAAAAAATTTTGCTGGGGTGTAGTT
TTTTTTTTTTTTTTCTTCTTCTTATTTTACTCCTTCTCTTACTTACCGCT
TCTCACCCTTTCTCTTATTTTTATCCCTATTTATATCCATCATCCTCTTC
TCCTATTTTTTCCTTCTCCTCACACCTTTTTTTCTTCGCTTTCTTCCTTT
TTTTTTTTTTTTCTCTCCTATCCTTTCCTTCCTTTTTTTCCTCTTTTTTT
TTTCCCTTATTTCCCTTCATTCTCTTTTTACCCCCCTACTCCCTCCTCCG
CTTAAGTTTTAGTTTAGTCCCTTGATTCCCTGTTATATTTTGTTAGTTCC
CTTA
AATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTAGCTACTGGTGGCAATTGCCTA
GATATACTGGGAAGAGGTCTGCATATCTCCCTGAGATCTCCTCAGGCCTT
CACAGTCAGCAATATATCACTGTAAAAGAATTGTTTAAAAAATGAGACTG
AAAGGAAATGTTCTCAGAGAGAAATTCACAGAATAATTCAGAAGAATGAC
AATCCCTTAGACAAACTGAAAAAAAGAGAGAGAAGACCTATATTAACAAA
GTTAGAAATGAAAAGTATGCTGGTGCAAAAACAAACAAACAAACACACAC
ACACACACATATTTTAGGCACACCCGCCCAGAGAAGTAAAAGAAAAGTCC
AGTAAAATCTATATCATCATTAGGATAATCTCTGAACAGTTTTATTCGAA
AACCTGGAATGCCAAGAAAATGAAAGAAAATAAAACTTGAGACCTGTGAT
TCATGTTGAAGAATAAAAAATTACTGAACTCTTCCTCACCCCAGAGCCCG
ACCCCTCCCATCTAGAGAGTGTTCCCAGAACACTCTTGAACTCTTCACCC
CAGAATGCATTCCTGAACTCCTCACCCTAGAGTTCGAACCCTCCCAACTA
AAGACTGTTCCAAGAACATTTTTGAGATAAGGGCCTCCTGGAACAACCTC
AGAATGAACCGGGTACATTGCCAAATAATAGGACATGACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_p07.g1 MSMg01no159_p07.g1 CHROMAT_FILE:
MSMg01no159_p07.g1 PHD_FILE: MSMg01no159_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:47 2005
         (287 letters)



>mm_chr13_35105780_35106466
          Length = 687

 Score =  538 bits (278), Expect = e-157
 Identities = 281/282 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttagctactggtggcaattgcctagatatactgggaagaggtctgcatatctccctgag 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 354 tttagctactggtggcaattgcctatatatactgggaagaggtctgcatatctccctgag 295

                                                                       
Query: 61  atctcctcaggccttcacagtcagcaatatatcactgtaaaagaattgtttaaaaaatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 atctcctcaggccttcacagtcagcaatatatcactgtaaaagaattgtttaaaaaatga 235

                                                                       
Query: 121 gactgaaaggaaatgttctcagagagaaattcacagaataattcagaagaatgacaatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 gactgaaaggaaatgttctcagagagaaattcacagaataattcagaagaatgacaatcc 175

                                                                       
Query: 181 cttagacaaactgaaaaaaagagagagaagacctatattaacaaagttagaaatgaaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 cttagacaaactgaaaaaaagagagagaagacctatattaacaaagttagaaatgaaaag 115

                                                     
Query: 241 tatgctggtgcaaaaacaaacaaacaaacacacacacacaca 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 tatgctggtgcaaaaacaaacaaacaaacacacacacacaca 73


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)