BAC Information

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BAC

Clone NameMSMg01-160B09
Chromosome13 (Build37)
Map Location 111,135,688 - 111,136,243
singlet/doubletsinglet
Overlap genenone
Upstream genePde4d, LOC100040577, Rab3c, EG432803
Downstream gene9830130M13Rik, Plk2, LOC100040614, LOC668159, 4732495G21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160B09.T7 (MSMg01no160_b09.b1)MSMg01-160B09.TJ (MSMg01no160_b09.g1)
ACCAG359849AG359850
length717795
length of high quality
(start - end)
560 (43 - 602)157 (75 - 231)
definitionCHROMAT_FILE: MSMg01no160_b09.b1 PHD_FILE: MSMg01no160_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:57 2005CHROMAT_FILE: MSMg01no160_b09.g1 PHD_FILE: MSMg01no160_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATGACTCTGAGCTCCCAGGTGGTTTTCAACCTTGTCCCTTTTCTACCG
ACTTTGGAATTACATTATATACCTTCATATTTTAATGGGTATGGGTGTTT
TGCCTGCATGTGTGCCTGTGTACCGCTTGCATGCCAGGTATCTATAGAGG
CCAGCAAAGAGCGTTGAATCCCCTGGAACTGGAGTTACAGATGGCTTGTG
AGCTTCCATGTGGGTGCTGGGAACCAAAGTCTGATCCTGCACAAGAACAG
CAAGTGCTTAGTGGGCAACAAGCCATCCTCCCTCCGCCCCCTTGTTTGAG
TTTACTAATTCGAGTGTTCCCGCAAAGCACCGTCTTCCTTAGGAAATGAT
TGAACTAATAAACAATTCCGTGAACCAGGGTGGTTTTCCCCGGGGTTACT
AAGAGGAGCATGAGTGATTCAAAAGCATCTGCACCATCAGAATGCACACC
CAGCACTGGTCACAGCTGCTCCGACTCGACACTGCGCTCCTGCTCGCCAC
AAGGCTCGGAGGCAACTCCACGGTCTGAACATCTTTCTTTCTGCAGTTTG
GTTGCTCAGTCACATCTGCAGCAGCTGTTTACTCCTCTTGTACATTGGGA
GGGAAGCAAGCTCAAGAATCTTCCAAGCCGCTGTTCTCCCAGGTATGTGA
CCATCTCTTACCCTCTT
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGATTTATACTATGCTTGTATTTGTT
CTTATTATTTAATTGCTAACCATTCAAATTAATGATAGATGTTTATTATG
AAAGCAACAGAGCCTTCACCATTAACAATGGAAATTAACAATGGATAGTT
GATAGAAATGTAGTAGTGGGGAGTAGGGGTATGTCCCCTCCCTCCCTCTC
TTTCTCCTATTTTCCCCCTTTTTTTCCTCTGCCCTTTTTCCCCCCATTCC
ATTTTTATTTTTTTCCCTTTCTTTTACCTCTGTGCGCCCCCCCCCGTCTA
CGCACGATTTTTTTTTTTTTTTTCCCCCCCCCACCCCCCCTTTTTTTTCC
TCTTTTTTTTTTCCTTCCTTTTTTCCCCCCCTTTAAATAAAAAAAACCCC
ATTGCCTGTCGTTGTTTTCTTTCTTTTATTTCCCCCTCCCCCCCTTTTCC
TTACCTTTTTACCCTTATTTTCTTCTTTCGCTCCTTTCATTTACTCTTCC
ACATCCATCTATTTTTTTATCTCCTCCCCCATTTTTTATTTCATATATTT
CCCATTAATTCTATCCTATGCTGCCCCTCCCTGTGCATTTTACATTCCCA
CCTACGTTATTATAAATTTCCTCCATATATTCCATATAAGATCATAAAAC
TTTATATCGCACACCCATTTACCTCCCCCCCTCATCCCCCCACTTTATTC
ATTTTTCATTTCCCCCCCCCTCTCCTTTCTTTTCACCTCTTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_b09.b1 MSMg01no160_b09.b1 CHROMAT_FILE:
MSMg01no160_b09.b1 PHD_FILE: MSMg01no160_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:57 2005
         (560 letters)



>mm_chr13_111135383_111136342
          Length = 960

 Score = 1060 bits (548), Expect = 0.0
 Identities = 554/556 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgactctgagctcccaggtggttttcaaccttgtcccttttctaccgactttg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gaattcatgactctgagctcccaggtggttttcaaccttgtcccttttctaccgactttg 802

                                                                       
Query: 65  gaattacattatataccttcatattttaatgggtatgggtgttttgcctgcatgtgtgcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gaattacattatataccttcatattttaatgggtatgggtgttttgcctgcatgtgtgcc 742

                                                                       
Query: 125 tgtgtaccgcttgcatgccaggtatctatagaggccagcaaagagcgttgaatcccctgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgtgtaccgcttgcatgccaggtatctatagaggccagcaaagagcgttgaatcccctgg 682

                                                                       
Query: 185 aactggagttacagatggcttgtgagcttccatgtgggtgctgggaaccaaagtctgatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aactggagttacagatggcttgtgagcttccatgtgggtgctgggaaccaaagtctgatc 622

                                                                       
Query: 245 ctgcacaagaacagcaagtgcttagtgggcaacaagccatcctccctccgcccccttgtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgcacaagaacagcaagtgcttagtgggcaacaagccatcctccctccgcccccttgtt 562

                                                                       
Query: 305 tgagtttactaattcgagtgttcccgcaaagcaccgtcttccttaggaaatgattgaact 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgagtttactaattcgagtgttcccgcaaagcaccgtcttccttaggaaatgattgaact 502

                                                                       
Query: 365 aataaacaattccgtgaaccagggtggttttccccggggttactaagaggagcatgagtg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aataaacaattccgtgaaccagggtggttttccccggggttactaagaggagcatgagtg 442

                                                                       
Query: 425 attcaaaagcatctgcaccatcagaatgcacacccagcactggtcacagctgctccgact 484
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 attcaaaagcatctgcaccatcagaatgcacacccagcacgggtcacagctgctccgact 382

                                                                       
Query: 485 cgacactgcgctcctgctcgccacaaggctcggaggcaactccacggtctgaacatcttt 544
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caacactgcgctcctgctcgccacaaggctcggaggcaactccacggtctgaacatcttt 322

                           
Query: 545 ctttctgcagtttggt 560
           ||||||||||||||||
Sbjct: 321 ctttctgcagtttggt 306


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)