BAC Information

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BAC

Clone NameMSMg01-161F18
Chromosome13 (Build37)
Map Location 13,495,449 - 13,495,830
singlet/doubletsinglet
Overlap genenone
Upstream geneHeatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b
Downstream geneLOC664960, Nid1, Lyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2, Tbce, Ggps1, LOC100040243, Arid4b, LOC100039916, Hecw1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161F18.T7 (MSMg01no161_f18.b1)MSMg01-161F18.TJ (MSMg01no161_f18.g1)
ACCAG360783AG360784
length1,2471,253
length of high quality
(start - end)
425 (27 - 451)383 (68 - 450)
definitionCHROMAT_FILE: MSMg01no161_f18.b1 PHD_FILE: MSMg01no161_f18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:52 2005CHROMAT_FILE: MSMg01no161_f18.g1 PHD_FILE: MSMg01no161_f18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:53 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNGGACACTGGGCCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCAC
CAATGTGGAATCATCCTGCTGTGCAATTATAAGTCTACACATCATGGCTG
TGATATTGATTTTTATCATCTCACACTTATGACTTCCTATATAAACCATC
ATAATATTATGTTGATTAAAATTGTCTTGCATCCTCATACATTTGTGCAG
TTAGAATGTGTCCCCAAGTTCTGCTTAATGGCAAAACAGTTTGTGTCTCT
TTAACTCTTATTCAAAGCATAGGGAAACAATGAAGGAAAGTGACAAAATC
AAGATTATACTTCATGAGAGTCATCACTTCTCTAGAAACCTCATAAAGCA
CTCTATTGAACTTTATGAATTTAATTCACTCTAGAATTCTACTTCACATT
ACAATGACTATATTTTATACTTTTACAATTGAACTTATACAACTCATATT
TTTTTTTCCCCCCCCCCCATATATGTTTGTATAGAAAAAAAAAAGATGAT
TTCAGTCTTTTGAAGAAAAAAGTATTTTAACTAACTCTATTATATTATTC
AAATGTGGTTACTTAGTATGCAGCTCTTCTGAAATCAGGAGCCATGATTT
TGGATGCCTGGGAAAGCCCTCTGGACGATCTAGTGAGTGAATTATCTACC
ATAAAAAATGTCCCTGATATAATCATCTCCAAAGCCACAGACATAAAGAA
AAAGATCAACGCAGTCCGGAACGGGGTTAATGCCCTCATGAGCACCATGG
TGAGTAGTCCCATATATGTTTTTTCACTTTTCTTCTTATAAGAGAGGTGA
GCAGAGCAAGCATAAAGTTTTGAAGGAGTTCACTTTAAAAAATACTAACA
AACATAAACAAAAACAAAACCAGAAACAAACAAACTAACAAAAAACCCTT
TGGCATCCATATAACTACAAGCCATACTACTAATTGGATGATGGCAATTC
CAACTGTCCTGAGAAGAGTGTTATTCAAAATCTTAAATTCGCAGGGCTCT
TAAGGAAAAAAAGAAAATGCCCCTCCTTATAATTTGGACATTTCCCCCCT
CCGTGGTAAAATATAAAAAATACCAACCTAACTCTTCTCCCCCCTAATNC
TCGGAGCAGGGTGTGGTACCCCCACCCTCTCCTGTAAATATTTCATCTCT
AACCCTCCACGTTATAAAAAATTTCTTTTCTTGGTTTCCCCGTTTCAAAA
TATTTTCCTCTTTTTTAAATATTTTTTTCTCTCAACATAAAAGTTTA
NNGGGTGACGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAATAAAAGACGTTGTTATAGGACTGGGGAAGAA
GGGAATCTGGAAGGCCTGGGGCTCTTCCCAGGAGAAGTGGAGATCCAGGA
ATTAGGAGGCAATCTGGGGAGTCAGTGGAACCCAAAGCCAAGCTGGGTGT
GACAACGAAGGCCTGTGCTTCCAGCACACCAGAGGCGATAGCAGGCAGAT
CAACAGTTCAAGGACAGCCTCTGCTACACTGCAAATTTGAGGCCAGTTTG
GACTATGTGAGGCCATGTCTCAGGAACCAGGAGAAAGAATATAAAATCAC
CCTGTGGCTTCAGTGGTGACCTTTAATACAGGATGTCACCTCACCACGGT
TTGGCTGCTGGGACATGACTGCTAAGGGTCCAGCAAGAGCGCCTTATTAT
TTTTTTCCCCCCCCCCAACTTGCTGTGCCCCTGTGCAAAAGAGAAGATGC
GCTTAGTCAGTGAGTCCTGGAAGCAGTGGGGTCCACAAGGGAGGAACAAG
AAATGCATGGCTGTGGGCATGGAAACCACAGACAAGAACAATCCCTGATT
TGCCAAAAGCCTGTGAGAATCCCAACTTTCTGCGCCAGTGAACCCCAGTC
ACTATGAAAATGGTGGACGCTGGATATGTGTGCCCATAGCACAGGATCCC
AGGCTCAGGAGATCACATCACCCCATACAACTCAAACAAACTTCAGGCAT
AGGGTTAGCCCACAGACAGAGTCGCTTTTGTAAGGAACATCTGAGTCTAG
AAACAGTCCCATAGGTGAGAACGTCTATTGGCAGGAGAGGGTGAGTATGT
CACTGGGAGAAGTCTCATCAGAGGAGCTTCTTACTTCAATCTGTGGGCAA
GTCTCAGCCCTACTTGTAAACTTCTCCCGGGTGACGCCCCAAATTGAGCT
GGCCCCCACTCCCGAAGGTTCCATAGGTCCCCCTTTCTGGGTTTAGAGGG
CAACAAAAATGTACACCGTTGGCTGGTTGCTCCCCTGGGTCTTGGATAAG
CTCAATTACCCGTTCTACCCTCTAGTTTTACCCTTAGGTGTACAATATAG
AAAGTACTTCCTTTTTTTCTTGTGGAACCCTTGGCACTTGTGTTTATAGT
TTTTCCCTCACTGGGTGTTTCTTACTTGTTGGTTTCTTTCCTTCTTTTCC
TGTTTTATATTCTTTGTCAATATATTATCTCTTTTTTCATGTTTTTAGTC
CTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_f18.g1 MSMg01no161_f18.g1 CHROMAT_FILE:
MSMg01no161_f18.g1 PHD_FILE: MSMg01no161_f18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:53 2005
         (383 letters)



>mm_chr13_13495249_13496031
          Length = 783

 Score =  708 bits (366), Expect = 0.0
 Identities = 378/382 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aataaaagacgttgttataggactggggaagaagggaatctggaaggcctggggctcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataaaagacgttgttataggactggggaagaagggaatctggaaggcctggggctcttc 260

                                                                       
Query: 61  ccaggagaagtggagatccaggaattaggaggcaatctggggagtcagtggaacccaaag 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaggagaagtggagatccaagaattaggaggcaatctggggagtcagtggaacccaaag 320

                                                                       
Query: 121 ccaagctgggtgtgacaacgaaggcctgtgcttccagcacaccagaggcgatagcaggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaagctgggtgtgacaacgaaggcctgtgcttccagcacaccagaggcgatagcaggca 380

                                                                       
Query: 181 gatcaacagttcaaggacagcctctgctacactgcaaatttgaggccagtttggactatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatcaacagttcaaggacagcctctgctacactgcaaatttgaggccagtttggactatg 440

                                                                       
Query: 241 tgaggccatgtctcaggaaccaggagaaagaatataaaatcaccctgtggcttcagtggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaggccatgtctcaggaaccaggagaaagaatataaaatcaccctgtggcttcagtggt 500

                                                                       
Query: 301 gacctttaatacaggatgtcacctcaccacggtttggctgctgggacatgactgctaagg 360
           |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 gacctttaatacaggatgccacctcaccacggcttggctgctgggacatgactgctaagg 560

                                 
Query: 361 gtccagcaagagcgccttatta 382
           ||||||||||||| ||||||||
Sbjct: 561 gtccagcaagagcaccttatta 582


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)