BAC Information

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BAC

Clone NameMSMg01-161N08
Chromosome13 (Build37)
Map Location 88,935,130 - 88,935,506
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667230, EG435375
Downstream geneEdil3, Hapln1, EG667266, Vcan, LOC100042940
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161N08.T7 (MSMg01no161_n08.b1)MSMg01-161N08.TJ (MSMg01no161_n08.g1)
ACCAG361136AG361137
length1,2541,269
length of high quality
(start - end)
320 (77 - 396)381 (70 - 450)
definitionCHROMAT_FILE: MSMg01no161_n08.b1 PHD_FILE: MSMg01no161_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:53 2005CHROMAT_FILE: MSMg01no161_n08.g1 PHD_FILE: MSMg01no161_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGCGCATTGCGGCCTATAGACTCCATAGGGAGAGGATCCGCGGAATTC
ATTCAAACTATATGGCATACCATTCAATTATATTTTTACCTCTTGTTCCT
TTTTCTGTTTGTTTGTTTTTGTTTGTTTGCCCGTTTTTTGAGACAGGGTT
TCTTTGTTTATCTCTGGCTGTTCTGGAACTCACTCTGTAAACCAGGCTGG
CCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAA
AGGCGTGCACCACCACGACCGGCCCTGTTGTTCTTGATACAGCTCTTACT
ATATAGCCCTGACTGGCCTAGAACTAGATAGATCAGGCTGGTCTTCAGCT
CACAGAAATCTGCCTGGTTAAGCCTTGGAAGTGCTATGTTTAAGAACATT
TGTTCCAAATAAGTCCTGCTTAAATAATTTGTCAATCTATGTATATGTTT
TTATTTCCCCCCCCCCCGGGTTTTAAAGAGTCCGACAAAAAAGGAATGTA
AAGCAGGATTATTTCTCATAGTTCTTTCTCTAAGATATCAATTACTCTCA
TTCTAAGGGACTATGATAAGATTAAAATAACACTCTTTAGTGCCTAAACA
AGGATAAAGGGCAATGAAACTATAAAAATGGACGTTTATTTACCTCAATA
AACACAAAGAAAAAATGTGTACAAGTTCACAGGTAGCTGAATGCTTATGC
ATTTCAATATGATATGAGATGGAGATCACCAGTGTTCATTCTCAGGCTAG
GAAACAAAGAAGCAAACTATGTTTCCTTATATGGAAAAACAGTGTTAGTA
CCAATAACATCCTTATTTCTTAAAATTTCTATGAAAGCAAATGACATAAT
ACTGTGGCTTTCAATTCAGTGCTTACAGTTAATAAATATGCAATGAGTGT
TAATTTTTGTAATGAACAGTGACATACAAAAGTACTTAAATTCTCCCTTA
AAAACCAATTGCCTAGCCTTTTAAAACCTGCTGGCCTTTTCCCTTAAATT
TACATCAATTCCGGACTTTTTTTCTCCCGTTTAACTAATAATAAAAATTT
CCTTTTTTTGTCTTATCAAATTAATTTTGAACTTTTCTTTTACATCTTCT
TCCTCTAATATTCTTTTTTTAACATTCTATCATCACCTGTTCTTGTCTTT
TTCCCTTTTTTTACACATTTTTTTATACATCCACCTAATCTTTTCTCTAA
CTGCTCCTCTCTCTTCCCATCACCTAATTAAAATCTTCTCCTCATCCTCT
TCCC
NNTTTTTCATGGTAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCATTATTGACAGAATTGTAATACCACTTTT
TGATGATTCTAGGTCCTTATGATTTAATGTAAATTTTTATTCCTATTTAT
TTTTTGTTTTCCATCATAGAAACTGTTGAATATTTCATTAATGCTCGATA
GATATACTGACCCTTACAATTGATTTTTCTTTTTTTGTTTCTAAACCAAA
CATCTCTTGTTGTGGATATTAAGAGAAAATGATTGAATGACTTTGATTTC
CAATTTTCCAAGCATTTTCAAATTTCCTCCACCCAGTCACCCATTAGCCT
GGGAGTATCCTTTAGACATGGATGTGATCTCATTTATCACTATACACATG
GTACCAGCAGTTTAGTTAATTACTAAATACTGGTTTGGTGAATGTTCTTT
TTTTTTCCCCCCCCCCCCAAATATTTAACATCCAAATAAAAAAAAAGTCT
GTGACTCTGAATAAACTGCAGTTTCCCATCCCATGCCTTAGGTAGAACAT
TCGAGAAAATGTAGACCAAGTTTTCCAAGATAGCATGAATTGGATTAACA
TTATTGTTTCTGGGAAAGTGGAACAGGGTGAGAAGAATAGTTCTTAAATC
ATATATATCCTTTATACTTCCCAAAATTCTCACACAGGAAGGCAGCAAAC
ATCAGAAGAAAATTGTGGTTTAGAGTCAGACAACTACTTTTAAATGGTGA
CATTTATTAACCAACTGAAAATTCTCCACAAAAAAGTCTGGTTAGATGAA
AGGGAAACTGTCTTTTGCTTGCCTGTGGTAGTGNCAGTGTCAGGCCTTGC
TGGCTGACAGAGGACTACGCAGCCTTTGTTCCCTTTCCATGGTCCAAATG
TCTAACTTCATTGCCTCCTAGGCAAAACAGAAGTCAAACCCTTTGTGAGT
AAAAGAAAATTTTCTGGGGGAAATTTCCTTCCTGGGCAAATTCTCTTATT
GGTTTCAATTTGAAAAATAACTCCCCCCCGCCAAGAGTTCTCAAAAAATT
TTTTTTCTCCACACAATATTTTTTTTCAAAAACCTCTTTTGGTTTTTTGT
TAAAAAAGCCCTTTTCCCTTATTAAATGGGTTTTTTCTCCCTCCTCACCC
CCCCACAAAAAGTTTTTCTTCATCGTAATTAAAAAAATTTAAGGTCCCCC
TCTTCTCTTTCTTTTATTCTTTGTTGGTACTTCTTCACTCTTATAATGTG
TTATACTCTTAGTCCTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_n08.g1 MSMg01no161_n08.g1 CHROMAT_FILE:
MSMg01no161_n08.g1 PHD_FILE: MSMg01no161_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:54 2005
         (381 letters)



>mm_chr13_88934930_88935709
          Length = 780

 Score =  646 bits (334), Expect = 0.0
 Identities = 367/378 (97%), Gaps = 1/378 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcattattgacagaattgtaataccactttttgatgattctaggtccttatgatttaatg 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 577 tcattattgacagaattgtaatagcactttttgatgattctaggtccttatgatttaatg 518

                                                                       
Query: 61  taaatttttattcctatttattttttgttttccatcatagaaactgttgaatatttcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 taaatttttattcctatttattttttgttttccatcatagaaactgttgaatatttcatt 458

                                                                       
Query: 121 aatgctcgatagatatactgacccttacaattgatttttctttttttgtttctaaaccaa 180
           ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 457 aatgctcgatagatacactgacccttacaattgatttttc-ttttttgtttctaaaccaa 399

                                                                       
Query: 181 acatctcttgttgtggatattaagagaaaatgattgaatgactttgatttccaattttcc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 398 acatctcttgttgtggatattaagagaaaatgattgaatgactttgattttcaattttac 339

                                                                       
Query: 241 aagcattttcaaatttcctccacccagtcacccattagcctgggagtatcctttagacat 300
           |||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||
Sbjct: 338 aagcattttcaaatttcctccaccaagtcacccattagcctgggagtatcctccagacat 279

                                                                       
Query: 301 ggatgtgatctcatttatcactatacacatggtaccagcagtttagttaattactaaata 360
            ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 278 agatgtgatctcatttatcactatacacatgggaccagcagtttagttaattactaaata 219

                             
Query: 361 ctggtttggtgaatgttc 378
           |||| |||||||||||||
Sbjct: 218 ctggcttggtgaatgttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 780
Length adjustment: 9
Effective length of query: 372
Effective length of database: 771
Effective search space:   286812
Effective search space used:   286812
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)