Query= MSMg01no161_p01.b1 MSMg01no161_p01.b1 CHROMAT_FILE:
MSMg01no161_p01.b1 PHD_FILE: MSMg01no161_p01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:08 2005
(412 letters)
>mm_chr13_103772469_103773274
Length = 806
Score = 735 bits (380), Expect = 0.0
Identities = 397/406 (97%), Gaps = 6/406 (1%)
Strand = Plus / Plus
Query: 5 gaattcttagaagaactcggatgtccagcattccgaggtcaggctgctgatcccaagtca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttagaagaactcggatgtccagcattccgaggtcaggctgctgatcccaagtca 264
Query: 65 tcgaagacagtacccaggaaacaaaatggcttccaagaagttatgaatctgtaagcaccc 124
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcaaagacagtacccaggaaacaaaatggcttccaagaagttatgaatctgtaagcaccc 324
Query: 125 acttagccccaaaacagcttatcttggatgggtcttttaaacggatctgaagccccagga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acttagccccaaaacagcttatcttggatgggtcttttaaacggatctgaagccccagga 384
Query: 185 actgcttttctcggcctctaagaccaggcaagctaccacaagctccatacttgcaagaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 actgcttttctcggcctctaagaccaggcaagctaccacaagctccatacttgcaagaaa 444
Query: 245 ctcaattctgccagggactggggagtttgggaagaggatcctcctgagagccctgtccag 304
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 445 ctcaattctgccagggactggggagtttgggaagaggatcctgctgagagccctgtccag 504
Query: 305 gcttctgatcagcagagcggtaagaggagctctggaatccatggtaatttgctactttga 364
||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 505 gcttctgatcagcagagcggtaagaggagctctggaatccatggtaatttg------tga 558
Query: 365 gatgaaatagggacacagaatacaacacatgtttacgtgtttatac 410
||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 559 gatgaaatacggacacagaatacaacacatgtttacgtgtttatac 604
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 806
Length adjustment: 9
Effective length of query: 403
Effective length of database: 797
Effective search space: 321191
Effective search space used: 321191
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no161_p01.g1 MSMg01no161_p01.g1 CHROMAT_FILE:
MSMg01no161_p01.g1 PHD_FILE: MSMg01no161_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:08 2005
(380 letters)
>mm_chr13_103891174_103891947
Length = 774
Score = 654 bits (338), Expect = 0.0
Identities = 367/380 (96%), Gaps = 6/380 (1%)
Strand = Plus / Minus
Query: 1 cagaaagcttacagagtgctctggggggctggggctggcgttggggggcagcaaaatggc 60
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 485 cagaaagcttacagagtgctctggggggctggggc------tggggggcagcaaactggc 432
Query: 61 gttcctctgccattgctgcttctgggtcaggtagaaagtcaagggagaacgaaccttctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gttcctctgccattgctgcttctgggtcaggtagaaagtcaagggagaacgaaccttctt 372
Query: 121 tgtggggagatgagaccctctacctcccttgacatggggcctctgggtggacagatgttc 180
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 371 tgtggggagatgagaccctctccctcctttgacatggggcctctgggtggacagatgttc 312
Query: 181 agaaggaaaggctgagtttgctgggaggggaagatggagccgggggagtcgggtgcagag 240
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 311 agaaggaaaggctgggtttgctgggaggggaagatggagccgggggagtcaggtgcagag 252
Query: 241 ggtagatctgaaaatctcaagtacctttgctttataaaaaacaaacatgcagggctcggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ggtagatctgaaaatctcaagtacctttgctttataaaaaacaaacatgcagggctcggg 192
Query: 301 agatggctcagcggctaagagcactggctgttcttccagaggtcccgagttcaatttcca 360
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 191 agatggctcagcggctaagagcactggctgctcttccagaggtcctgagttcaatttcca 132
Query: 361 tcagccacatggtggctcac 380
||||||||||||||||||||
Sbjct: 131 tcagccacatggtggctcac 112
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 774
Length adjustment: 9
Effective length of query: 371
Effective length of database: 765
Effective search space: 283815
Effective search space used: 283815
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
