BAC Information

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BAC

Clone NameMSMg01-162F12
Chromosome13 (Build37)
Map Location 50,138,271 - 50,138,586
singlet/doubletsinglet
Overlap genenone
Upstream geneWnk2, Ninj1, 1110007C09Rik, Susd3, Fgd3, Bicd2, Ippk, Cenpp, Tes3-ps, Ecm2, Aspn, Omd, Ogn, Nol8, Iars, LOC667488, LOC670357, EG638833, Gm272, EG667503, EG667507, LOC100040099, LOC625110
Downstream geneLOC676907, LOC667546, LOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17, Gm806, EG639044, Gm904, LOC100040315, EG667693, LOC100040161, LOC100040190, EG667712, LOC676997, EG667717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162F12.T7 (MSMg01no162_f12.b1)MSMg01-162F12.TJ (MSMg01no162_f12.g1)
ACCAG361500AG361501
length715713
length of high quality
(start - end)
319 (47 - 365)289 (76 - 364)
definitionCHROMAT_FILE: MSMg01no162_f12.b1 PHD_FILE: MSMg01no162_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:41 2005CHROMAT_FILE: MSMg01no162_f12.g1 PHD_FILE: MSMg01no162_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAATATCGTATTTTATAATTCAACATAATCACAATGAAATTTAAA
ATCTTTTCCTCCTTGGAATTTGAGAGCTATACAAAAATCGAGGGGAAAAA
TGAAACTCTTTTGAGGAATGAACTAGTTAACGTCCTCCCATACAATACCA
GGACCTATGGACTGGAGAGGTGGCTTAGTAGTTAACAGCACTGGCTGCTT
AGGAGAGGAGCAGGAATGAATTCCCAGCACTCACTGGTGGCTCACAGCCA
TGGGTAACAACTTTCAGGGAAAAGTGCTTGGTATAGAATAATTTCCTGCC
AAGATATACAGCTAATATTGGACTCCCCCCCACCACGTGTTCCTAGGAAT
CAATGAAGAGAAAGGTTGTTAACACNAGGAGAATAGCACACCTGTATGCA
TTAAAATGGAAATATGAACAGGCACCAAACATCATAAAAGTCCCTAACCC
CATCGACTAACACTAAAGTGACTAAAGCAAGTGAAATTGGGAAAAGAAGA
TTCAAAGGGACACAAAATAAACCCACCCACATGCCAGAGGGAACCTGTGT
ACACCTGAGCTGGAGCCCTAGAAACACACAAGCTAATAATAGCACCATGC
AGGGAGGAAGCAGGCTCCAGGGAAGTCACAGCAATTAAATGGCGGAATGT
GAACATCTGTCAACN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCCATTATGCTCTGAACCTTATAAT
TTGGTTGAGTTATTTTGGGTGTTTCAATCTAATTTCTTGTATTCTTTATA
TATTCTGAACCTTAATTAACCTGAAAAGCTGACAATGTTGAAGTATCAGT
AGAATAATTATCATCCTCTGTGATGACCTTTTAAAAACTATTCTTCAGTC
AATTTATTTATTGGTTGAATTTTGAAATTTAGTAATCACCATTGTTTATA
TATTCTAGATGTTAAGACCCCACAGAGAATTTCACTAGTGGGATGATCTC
TGATCCTCCAGTTTTTATAAGCAACCCCCTATTTCTGCACAGGGCCTTTT
AACTTCATGTAAATTCATTTTCAATTCATGGAATCTTTTCAATGCTATTC
GAATTCCTTTTTTCCCATTAAATTTTTATTCCCTTCACATCCTGAGTGTA
GTCCCTTTTTCCAGTCCCAACCTCACAAAAAAAAAAACCATTACTCCCTT
TTCTTCTCATCAAAGAGGGGAGACACCCCCCCTTGGGTACCAACCAGCCT
CAACAATCAACTGGAAGCAGTGCATCCTGTGCCACTGAAGCTCACCCAGG
CAGTCCAGTTAAGGAAAGGGAATCCAAAAGCTGGCAACAGTGTCAGAGAC
AACTCCTGCTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_f12.b1 MSMg01no162_f12.b1 CHROMAT_FILE:
MSMg01no162_f12.b1 PHD_FILE: MSMg01no162_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:41 2005
         (319 letters)



>mm_chr13_50138067_50138785
          Length = 719

 Score =  572 bits (296), Expect = e-168
 Identities = 311/316 (98%), Gaps = 1/316 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatatcgtattttataattcaacataatcacaatgaaatttaaaatcttttcct 64
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatatcgtattttatgattcaacataatcacaatgaaatttaaaatcttttcct 264

                                                                       
Query: 65  ccttggaatttgagagctatacaaaaatcgaggggaaaaatgaaactcttttgaggaatg 124
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 265 ccttggaatttgagagctatacaaaaatcgaggggaaaaatgaaactcctttgaggaatg 324

                                                                       
Query: 125 aactagttaacgtcctcccatacaataccaggacctatggactggagaggtggcttagta 184
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aactagttaatgtcctcccatacaataccaggacctatggactggagaggtggcttagta 384

                                                                       
Query: 185 gttaacagcactggctgcttaggagaggagcaggaatgaattcccagcactcactggtgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gttaacagcactggctgcttaggagaggagcaggaatgaattcccagcactcactggtgg 444

                                                                       
Query: 245 ctcacagccatgggtaacaactttcaggga-aaagtgcttggtatagaataatttcctgc 303
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 445 ctcacagccatgggtaacaactttcagggggaaagtgcttggtatagaataatttcctgc 504

                           
Query: 304 caagatatacagctaa 319
           ||||||||||||||||
Sbjct: 505 caagatatacagctaa 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)