BAC Information

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BAC

Clone NameMSMg01-162G12
Chromosome13 (Build37)
Map Location 78,523,006 - 78,523,244
singlet/doubletsinglet
Overlap geneLOC100043052
Upstream geneLOC675063, D13Mgi7, 1110033M05Rik, 1700013G10Rik, Nr2f1, EG666856, LOC268676, LOC100042683, LOC622365
Downstream geneEG666883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162G12.T7 (MSMg01no162_g12.b1)MSMg01-162G12.TJ (MSMg01no162_g12.g1)
ACCAG361544AG361545
length710709
length of high quality
(start - end)
308 (45 - 352)239 (74 - 312)
definitionCHROMAT_FILE: MSMg01no162_g12.b1 PHD_FILE: MSMg01no162_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:46 2005CHROMAT_FILE: MSMg01no162_g12.g1 PHD_FILE: MSMg01no162_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAACTGAGGAATACCAAATGGCTGAGAAGCACTTAAAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGTAAATCAAAACAGCCCTGAGATT
CCACCTTACACCTGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGGA
GAAACTGGCAAAAATGTGGAGATAGAGAAACACTTCCATTGCTGGTGGGA
TTGCAAGCTGCTACAACAGCTCTGGAAATCAATCTGTCAGTTCCTCAGAA
AATTGGACATAACACTACCAGAAGATCCAGCAATACCTCTCCTGGGCATA
TATTTATATTATGCCCCACCCCCCCCCCAAGGACACATGCTCCACTATGT
TCATAGCAGCACCCCCCACAAAAAACAGAAACTGGAAAGAACCCAGATGT
CCCTCAACAGAGGAATGGATACAGAAAATGTGGAACATTTACACAATGGA
GTACTACTCAGCTATTAAAAACAATGAATTCATGTAATTCTTAGACAAAT
GGATGGATCTGGTGTATGTCGTCCTAAGTGAGGTAACCCAATCACAAAAA
GAACCCACATGATATGTACTCAGTGATAACTGGATTTTAGCCCAGAAATT
TATAACACCCAGGATACAACTTGCAAAACACATGATACAGAATAAGGAAA
GTGTGGACCN
ATACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATCACAGCAAGAAGGTAAGGGTTAAC
AATGGTGTCTGACTTAAACATTTAGAAATAATATCCATTGTCACTGAAAA
TTTTACTTTAGAATGAGACTTCATCATGTTTTGGAAGGGAAAGCATTGTT
GTTTCCCTGTGGTTGAAAGGCCAGGAAAGCCAGCTCTCAGGTGCATGGGA
AGGGATTCAAGAGGAGGGGACAGTGACTGCCAGGTCCCTAATATAGGAAC
ATGTGTGTTGGATTGTTAGGAACAGATGGTTGCCTGCATGGCCACAAAAA
CTTGGGGTTAATTACCCTTTGCTNANTCTTTCTATTTCCAGATCCTATTT
ATATAATTCTGACCCCACATAAAAAAAAACAAATGATGATGCTATAGCAG
GACAAAGGATATCCCGTCTTTTAAAGTGTTATTTTAGAAACAGGTACCAA
AATATACAACAAATAAAATTAAAGCCCCAATTCTGTTAAGGACATGTCAG
GAAATCTTGTAAGTCAGATCAAGGGATTTCTACTGGCCAAACCTGGATAA
CATGAGTTTCAAAGAATCAAGAATAATTAAGTTTAATCATTGACAATTTA
AATATCCCTACTGAGCATTGTACCAATCACCGAATTTGAATCTGCCTGTG
TCTGATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_g12.g1 MSMg01no162_g12.g1 CHROMAT_FILE:
MSMg01no162_g12.g1 PHD_FILE: MSMg01no162_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:46 2005
         (239 letters)



>mm_chr13_78522803_78523444
          Length = 642

 Score =  416 bits (215), Expect = e-121
 Identities = 232/239 (97%), Gaps = 3/239 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   cacagcaagaaggtaagggttaacaatggtgtctgacttaaacatttagaaataatatcc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 cacagcaagaaggtaagggttaacaatggtgtctgacttaaacatttagaaataatatcc 263

                                                                       
Query: 64  attgtcactgaaaattttactttagaatgagacttcatcatgttttggaag---ggaaag 120
           |||||||||||||||| ||||||||||||||||||||||| ||||||||||   ||||||
Sbjct: 264 attgtcactgaaaattgtactttagaatgagacttcatcacgttttggaagttaggaaag 323

                                                                       
Query: 121 cattgttgtttccctgtggttgaaaggccaggaaagccagctctcaggtgcatgggaagg 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cattgttctttccctgtggttgaaaggccaggaaagccagctctcaggtgcatgggaagg 383

                                                                      
Query: 181 gattcaagaggaggggacagtgactgccaggtccctaatataggaacatgtgtgttgga 239
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gattcaagaagaggggacagtgactgccaggtccctaatataggaacatgtgtgttgga 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 642
Length adjustment: 9
Effective length of query: 230
Effective length of database: 633
Effective search space:   145590
Effective search space used:   145590
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)