BAC Information

Click to search

BAC

Clone NameMSMg01-162I10
Chromosome13 (Build37)
Map Location 98,037,249 - 98,037,515
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667582, 1200014M14Rik, 9330128J19Rik, Polk, Col4a3bp, Hmgcr, LOC100039456, LOC625662, 1700029F12Rik, EG620648, 5730427N09Rik, LOC100039663, Gfm2, Hexb, Enc1
Downstream geneLOC667676, LOC100039691, LOC100039704, EG328314, LOC100039526, LOC100039740, Rgnef, LOC667703, Utp15, Ankra2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162I10.T7 (MSMg01no162_i10.b1)MSMg01-162I10.TJ (MSMg01no162_i10.g1)
ACCAG361628AG361629
length727747
length of high quality
(start - end)
271 (43 - 313)96 (73 - 168)
definitionCHROMAT_FILE: MSMg01no162_i10.b1 PHD_FILE: MSMg01no162_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:55 2005CHROMAT_FILE: MSMg01no162_i10.g1 PHD_FILE: MSMg01no162_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACAAGCTTCCCAGATAGCACACCATGTGTCTCATCTCATCACAGGCCC
CAAGGCACTGAAGCCATGTCAAGTGGCACACCTTAGTCATCCAAGCATTT
GGAATATGGAGGCAAGGTGAGGCAAATTTGAGGTCAGCCTGTGCTATATA
GTAAAGTCCTGTCTAAAACCGTACAACGTTAGAGCCAGATAACCATGGTC
TGAACACCTGGAATTGTGAGCCATGATGAGTCCCTTTAAGTTGGCTATCT
CGGATATTTGTTATTTTCAGTAGAAAGCTAGCTAACACACAGCCCTGTGC
TATTTTTATTTTTGCCCCCCACTCCCCACAATCTCCTCCCCTCAAATAAG
AGTCAGACGGCCCCCACTTAAAACAAAAAATGTCTTGTCTTGGTCTGCCA
CAGGCAGAACAGAACGATAGAATATCATGACCAAAACACTTTAATAACAT
ACTTAAGTCAGGACTCCACAGGCTTTGGCACCTGAACAGATAGTCTAAAA
TTACAGTCCAAGCTCAGGAGTATATAGAAAGGATGAAAAACTAACTCAAA
ACCTCATAAGATCATTTAAAATCAACCTTCAACCCCAGCTGTCTGAGATA
TAAAATCTAAATTTCCCCCTAATTTGATGCCCCTTTCAATGCCTTCCTAC
TGTTAGAATCGCCCCCTGTGTCCCCCG
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTGAAGAAGAGCCTGAGCAGGGAGTGA
TTGACTTTGAGGATGAAAGCGGTGATAAAGATGCACAGCCTGCTCTGGAA
ACTCACCCACGCCTGCAAGAAACAAGATGGGAACAAGGAATGATGGCACG
CGTTCAGAAAAAACCCCTGGGAGTCAGCTAGAGGAAACGTCCTTAACTGT
CCGCTGCTGGAGAAACAAGACCACCATTCCCATAGTGTGCGTGGTGGTTG
GAAACATTTGTACATTGTCTGGGATTTATGTAGTTCAGGCAAAAAGGAAG
ATTTTTTTTTGCATCCCCCCCCCCCCGATAGGTGGAATTAAATACACTTA
GAAAGTACACCCACCTTGAAAAAAATTAGGGTCCAGGCAACCTTTTTTTT
TTTTTTTAAGATTTATCCATTCACTATAGGTAAGTACACTGCAGCTGCCC
CTTTATACTCTAGAAGAGGGCATCATATTCTCGTACCCATGTTTGTGATA
CCCCACGTGTTTTGCTGGGATTAAAGACTTCCCCTCCTTGGAATTATTAG
TTTACCCTTTTTCACCTTCTGCACTCATCTTCTTTTTTTTTCTGCTGCCT
TTTTCTCCTCTACACCTCTTCTTTTCCTATCTGTCCCCATGAATCTCCCC
CCTCGCGCTCTTCTTTTTTTTTTTGTTCCCCACCTCTATTTTCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_i10.b1 MSMg01no162_i10.b1 CHROMAT_FILE:
MSMg01no162_i10.b1 PHD_FILE: MSMg01no162_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:55 2005
         (271 letters)



>mm_chr13_98036882_98037552
          Length = 671

 Score =  493 bits (255), Expect = e-144
 Identities = 264/267 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacaagcttcccagatagcacaccatgtgtctcatctcatcacaggccccaaggc 64
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 634 gaattcacaagcttcccagatagcacaccatgtgtcttatctcatcacaggccccaaggc 575

                                                                       
Query: 65  actgaagccatgtcaagtggcacaccttagtcatccaagcatttggaatatggaggcaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 actgaagccatgtcaagtggcacaccttagtcatccaagcatttggaatatggaggcaag 515

                                                                       
Query: 125 gtgaggcaaatttgaggtcagcctgtgctatatagtaaagtcctgtctaaaaccgtacaa 184
           | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 514 gggaggcaaatttgaggtcagcctgtgctatatagtaaagtcctgtctaaaaccatacaa 455

                                                                       
Query: 185 cgttagagccagataaccatggtctgaacacctggaattgtgagccatgatgagtccctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttagagccagataaccatggtctgaacacctggaattgtgagccatgatgagtccctt 395

                                      
Query: 245 taagttggctatctcggatatttgtta 271
           |||||||||||||||||||||||||||
Sbjct: 394 taagttggctatctcggatatttgtta 368


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)