Query= MSMg01no163_b18.b1 MSMg01no163_b18.b1 CHROMAT_FILE:
MSMg01no163_b18.b1 PHD_FILE: MSMg01no163_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:38 2005
(281 letters)
>mm_chr13_79133471_79134151
Length = 681
Score = 513 bits (265), Expect = e-150
Identities = 277/281 (98%)
Strand = Plus / Plus
Query: 1 taattcttatggaaatatatagtaataacataaatttaaaagcattttatgaaattgagg 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 taattcttatggaaatatatagtaataacataaatttaaaagtattttatgaaattgagg 260
Query: 61 aacctagaccaaggaaaaataattaaagaggggaactatgaaagaaatactctttaatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacctagaccaaggaaaaataattaaagaggggaactatgaaagaaatactctttaatct 320
Query: 121 atatacataatcaaattccaattttatttattttttattgtaagagcagtttccttttgg 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatacataatcaaattctaattttatttattttttattgtaagagcagtttccttttgg 380
Query: 181 tcttcctcaaaaatcactgagataaataatttactacactgagtaacatagaattatata 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 tcttcctcaaaaatcactgagataaataatttactacactgagtaacataaaattatata 440
Query: 241 taatattatttggtattgcatatatgtgtggatgtccatat 281
||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 taatattatttggtattgcatatatgtgtggatatccatat 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space: 182784
Effective search space used: 182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no163_b18.g1 MSMg01no163_b18.g1 CHROMAT_FILE:
MSMg01no163_b18.g1 PHD_FILE: MSMg01no163_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:38 2005
(339 letters)
>mm_chr13_79273980_79274723
Length = 744
Score = 497 bits (257), Expect = e-145
Identities = 322/345 (93%), Gaps = 7/345 (2%)
Strand = Plus / Minus
Query: 1 caaattggaaattaaaatgcagtgaatatcaaccaacttttctcaaaaagccgcacgtgt 60
||||||||||||||| ||||||||||||||||||| |||||||| ||||| |||||||
Sbjct: 544 caaattggaaattaatatgcagtgaatatcaaccagtttttctcagtaagccacacgtgt 485
Query: 61 gatcatggataacctcttttcctccaaatctgactttttgataacatttacctgtgtata 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gttcatggataacctcttttcctccaaatctgactttttgataacatttacctgtgtata 425
Query: 121 tgaaacaatataaactgatcaaattataatcttaaagtgagagctatccatttgacatgc 180
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 424 tgaaacaatataaattgatcaaattataatcttaaagtgagagctatccattggacatgc 365
Query: 181 atttgacacagttcaatttgatg-tttttt---ttatgtgttgaattaaccccaaaatat 236
|||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 364 atttgacacagttcgatttgatgcttttttattttatgtgttgaattaaccccaaaatat 305
Query: 237 tacattcttggcat-ctaaaattaaattagaac-aaatgaaacatttatgcaaaagtgat 294
|| |||||||| || |||||||||||||| ||| |||||||||| |||||||||||||||
Sbjct: 304 taaattcttgg-attctaaaattaaattaaaactaaatgaaacagttatgcaaaagtgat 246
Query: 295 aattcatattcaaactgtgagttctaaatctggatactctctaag 339
||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tatttttattcaaactgtgagttctaaatctggatactctctaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 744
Length adjustment: 9
Effective length of query: 330
Effective length of database: 735
Effective search space: 242550
Effective search space used: 242550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
