Query= MSMg01no163_h24.b1 MSMg01no163_h24.b1 CHROMAT_FILE:
MSMg01no163_h24.b1 PHD_FILE: MSMg01no163_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:06 2005
(281 letters)
>mm_chr13_8054536_8055215
Length = 680
Score = 418 bits (216), Expect = e-121
Identities = 235/242 (97%), Gaps = 3/242 (1%)
Strand = Plus / Minus
Query: 5 gaattccaggctagcccgggaatttacttagagtttttgtcagataaacaaagcaagtaa 64
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gaattccaggctagcctggaaatttacttagagtttttgtcagataaacaaagcaagtaa 332
Query: 65 aaacaaaacaaaacctacccagcttcactgatcaagcgagagatgttgtcaatgagtgca 124
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 331 aaacaaaacaaaacctacccag-ttcactgatcaagcgagagatgttgtcaatgagtgca 273
Query: 125 cacagagagctgtagctatttcatcagagggagaggcaaagggtcagaagagccatatga 184
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 cacagtgagctgtagctttttcatcagagggagaggcaaagggtcagaagagccatatga 213
Query: 185 acaaagccttctttttctttcttttctttttctttctcttcctct--ttttttttttttt 242
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 212 acaaagccttctttttctttcttttctttttctttctcttcctctcattttttttttttt 153
Query: 243 tt 244
||
Sbjct: 152 tt 151
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 680
Length adjustment: 9
Effective length of query: 272
Effective length of database: 671
Effective search space: 182512
Effective search space used: 182512
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no163_h24.g1 MSMg01no163_h24.g1 CHROMAT_FILE:
MSMg01no163_h24.g1 PHD_FILE: MSMg01no163_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:06 2005
(285 letters)
>mm_chr13_7910922_7911606
Length = 685
Score = 543 bits (281), Expect = e-159
Identities = 284/285 (99%)
Strand = Plus / Plus
Query: 1 attgttatcataattgccactccagattatcccttcttgtctccttcccaagttcaaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgttatcataattgccactccagattatcccttcttgtctccttcccaagttcaaata 260
Query: 61 cctgaactgctgaactgtgtggtactgcactgaaaagctgttctcttcacatctctgcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgaactgctgaactgtgtggtactgcactgaaaagctgttctcttcacatctctgcca 320
Query: 121 agcaatagtctcttggcagtcattcacctggacaaaagtgaccaaagaaagagtgataaa 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcaatagtctcttggtagtcattcacctggacaaaagtgaccaaagaaagagtgataaa 380
Query: 181 aagcttacctgtgtcctgataggatagaaactctactgcattaatttaagtagttttcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagcttacctgtgtcctgataggatagaaactctactgcattaatttaagtagttttcta 440
Query: 241 agtattactcatgttgaacacatttagagatcaatatgacttatc 285
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtattactcatgttgaacacatttagagatcaatatgacttatc 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space: 186576
Effective search space used: 186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
