BAC Information

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BAC

Clone NameMSMg01-163J20
Chromosome13 (Build37)
Map Location 87,718,004 - 87,718,282
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC675707, LOC667230, EG435375
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163J20.T7 (MSMg01no163_j20.b1)MSMg01-163J20.TJ (MSMg01no163_j20.g1)
ACCAG362360AG362361
length739742
length of high quality
(start - end)
355 (383 - 737)285 (80 - 364)
definitionCHROMAT_FILE: MSMg01no163_j20.b1 PHD_FILE: MSMg01no163_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:14 2005CHROMAT_FILE: MSMg01no163_j20.g1 PHD_FILE: MSMg01no163_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCACCCGACCAATACCGAATGGCAGAGAAGCACCTGAAAAAA
TGTTCAACATCCTTAATCATCAGCCAAATGTAAATCAAAACAACCCTGAG
ATTCCACCTCACATCAGTCAGAATGGCTAAGATGAAAAATTCAGGTGACA
GCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACGCTCCTCCATTGTTGG
TGGGATTGCAGGCTTGTACAAACACTCTGGAAATCAATCTGGCGGTTCCT
CTGAAAATTGGACATAGTACTACCAGAGGATCCAGCAATACCTCTCCTGG
GCATATATCCTTTATTATGTACCCCCCGCCAAGAAGGACACATGCTCCAC
TATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGTACCCA
GATGCCCCTCAAAAGAGGAATGGATACAGAAAATGTGGTACATTTACACA
ATGGAGTACTACTCAGCCATTAAAAAGAATGAATATATGAAATTCCTAGG
CAAATGGATGGATCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCAC
AAAGGAATTCACACAATATGTACTCACTGATACGTGGATATTAGCCCAAA
ACCTAGGATACCCAAGATGTAAGATACAATTTGCTAAACACATGAAACTC
AAGAAGAATGAAGACTGAAATGTGGACACTATTCCCCTN
AAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTGACAAAAATAACAAGAC
ATCTTTTAAATCAAGAGAAAGAGATAAATGTATGTCAGGACAGAAAATAA
GCCCCCATCTAAATGCAAGACTATTTAAGGAATTTATTTTCTTAAGTCTA
ATTAGAATGATGGGAGAAAGAGAAAAAAAGTTTTCCAGGTGCAATTATTT
CCCTGAAAAAAAAAAGCATTAAAATTTATTAATGCAGATCTTGTACCAAG
AGAAGAATAACAAAGTGTAACATATTGGAAATAAATTTTTCAGCTTAAAA
GCAAAGTAGTAGATTCTGATACTGCCCCCCCACAAAGTCATGCTGTAATT
TCTGATAAAATACAAAAAAAGAGATATTCAGATACATGTATTCAGTAGTC
TTTTGAAATATTAGTGAATATGGAATACATTACATTATTACCACACAAAA
GAGAGCAAATAGAATTCTTGAATATGAAAAGTGTACAGGATTTATGCCTG
AAATAATGTCTCACAATAAGTACACATACACTCCCACATACATGTATGCA
CACATATATACTTTCAGAGAGAAAATACATGATATTTGGCTTATATCTCA
ACCCAGCAATACCACTGTTTCTCTCCCACACCCCAAGGTTACAACTTGAG
TCACAATGAAGCAGATACTTGGAAGAAGACACCTTGAAAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_j20.g1 MSMg01no163_j20.g1 CHROMAT_FILE:
MSMg01no163_j20.g1 PHD_FILE: MSMg01no163_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:14 2005
         (285 letters)



>mm_chr13_87717804_87718487
          Length = 684

 Score =  495 bits (256), Expect = e-144
 Identities = 274/280 (97%), Gaps = 1/280 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttgacaaaaataacaagacatcttttaaatcaagagaaagagataaatgtatgtcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 479 tgttgacaaaaataacaagacatcttttaaatcaagagaaagagataaatgcatgtcagg 420

                                                                       
Query: 61  acagaaaataagcccccatctaaatgcaagactatttaaggaatttattttcttaagtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 acagaaaataagcccccatctaaatgcaagactatttaaggaatttattttcttaagtct 360

                                                                       
Query: 121 aattagaatgatgggagaaagagaaaaaaagttttccaggtgcaattatttccctgaaaa 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 359 aattagaatgatgggagaaagagaaaaaaagttttccagctgcaattatttccctgaaaa 300

                                                                       
Query: 181 aaaaaagcattaaaatttattaatgcagatcttgtaccaagagaagaataacaaagtgta 240
           ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 299 aaaaa-gtattaaaatttattaatgcagatcttgtaccaagagaagaataacaaaatgta 241

                                                   
Query: 241 acatattggaaataaatttttcagcttaaaagcaaagtag 280
           ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 240 acataatggaaataaatttttcagcttaaaagcaaagtag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 684
Length adjustment: 9
Effective length of query: 276
Effective length of database: 675
Effective search space:   186300
Effective search space used:   186300
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)