BAC Information

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BAC

Clone NameMSMg01-164G04
Chromosome13 (Build37)
Map Location 101,852,524 - 102,003,698
singlet/doubletdoublet
Overlap genenone
Upstream geneBdp1, Serf1, Smn1, Naip2, Birc1-rs1, Naip5, Birc1c-ps1, Birc1f, EG667838, Naip1, Gtf2h2, Ocln, LOC667861, Marveld2, Rad17, Taf9, Ccdc125, Cdk7, Mrps36, Cenph, Ccnb1, Slc30a5, LOC619865, LOC619917, EG619937
Downstream gene4933416M06Rik, LOC100039971, LOC100039983, Pik3r1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164G04.T7 (MSMg01no164_g04.b1)MSMg01-164G04.TJ (MSMg01no164_g04.g1)
ACCAG362877AG362878
length839742
length of high quality
(start - end)
211 (43 - 253)165 (227 - 391)
definitionCHROMAT_FILE: MSMg01no164_g04.b1 PHD_FILE: MSMg01no164_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:13 2005CHROMAT_FILE: MSMg01no164_g04.g1 PHD_FILE: MSMg01no164_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,852,524 - 101,852,729)(102,003,534 - 102,003,698)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTACATCACTTCCGTTTCTCAGTAGAGGAGGACCAGGGTTCCAAGAAA
AAGAACCTGTAAGGGTGTCAGAACACCAGCCCCAGCTCCAGCCTCACATC
TGTGTCCTTGGGTCATAAAACGGGTCAACCTCATGATGTCTGTGAACGCT
CAGCCCTGTCCCCTATTTGTAGGCTGCCATCATCCTTCACAGAATTTAAA
ACTTGATCAGACTACTCTGTCATCAAAAGAGAGTTGTGCTTTTTCTCAGT
GTTTGCCTGATTATGATTGTTTAAACCGTCTTCTATCGCAACCCATTCTT
GCTTGTTATTTTTTTTTCCCCCCCGCCCCCCCCGAAAAAGTATTCATCCC
CCTCCTTTTTCTAGAGGGTTCATCCTCTGTAAAGAAAACAAATTATCAAT
CCCTCCTTGGGCTTCCGCTGGAAATTTTTTTAATATCTCTCTGGTCATAC
TTGGGGGTAACCGTATCAATTTTGTGACTTTACTTAAAGAGGCTCCCTTC
TCTCTGCTCATGATTATTGGCCACTTCTTTAAAACACATTCTCTCCTCAT
CATTTGTACGCCTTTGTGATTTATACATTCTATAATATTATAATCCCTTC
TTATATGTAAAATTATTATTAATGTCCTTTATTTTTTTTTTGTTTCCCCT
CCTCTTCTTCATAATTTGTTCCCTACCTCATTTTGACCTCCATATTCTTA
AAATTCTTTTGGGTTGTTTATTTTTTTATTTTTATTTCTCCCTTTTTCTG
AATTCATCTTTTTATTATATTTAGTTTTAATCTTTATAA
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCATGTGGGCCAAGGAGATGGGCCAGCCTT
GAGCAGTGTGCTGTCTGGATTGATAGTGGGCAAAGACTCTTGCTGAAAAC
ATACTTCTGATCTAGGAATTCTATTTTATTTTCTTCTTTTGCCTTTAAAA
AATGCAGATAGGCTCTTGAGACCTAGAATTTATCCGTGCTACACAATTTA
TGCTAGCTCATTACCTCCTGCTAGACTCCAAGGCTTTGTAACGGAAATTG
GCTCTGATCTCCGAGATAGGCATTACATCATAGTCTTCTTTTAGCACATT
ATGTCATCCCTGCTGAGACGCATTATCTATGGTTGGCTCAGCAGTATCGA
TTTTTGTGGGCCGACTGCAGTGTTCCCAAAGAACTGCTGGGAACCACAGA
TTGAAATCTGAAACATTTATCTTCTAATAAGCTGAAAAGGGGAAAAGATG
TTCATGTTGGACCCCGTTTCTTTTCCTTAACCCTCTCCTTTCATGACTAC
TTGCAGATCGCTCTGCTGTGAGCACCGGATATACATGTGCATAGGCTTGT
GGAGGAGCTAACCTTTGGAAATTATCGATATTAAGGGGGAACTGACCCCC
TGTTCTTTCTTCTGGGACCAATTACTCTGGCACTTATCCATGATCTCATT
CTCAAGGGGTATGCTATACAAAAATGTCTCCAAAAAAAATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_g04.b1 MSMg01no164_g04.b1 CHROMAT_FILE:
MSMg01no164_g04.b1 PHD_FILE: MSMg01no164_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:13 2005
         (211 letters)



>mm_chr13_101852320_101852930
          Length = 611

 Score =  398 bits (206), Expect = e-115
 Identities = 206/206 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttacatcacttccgtttctcagtagaggaggaccagggttccaagaaaaagaac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttacatcacttccgtttctcagtagaggaggaccagggttccaagaaaaagaac 264

                                                                       
Query: 65  ctgtaagggtgtcagaacaccagccccagctccagcctcacatctgtgtccttgggtcat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgtaagggtgtcagaacaccagccccagctccagcctcacatctgtgtccttgggtcat 324

                                                                       
Query: 125 aaaacgggtcaacctcatgatgtctgtgaacgctcagccctgtcccctatttgtaggctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaacgggtcaacctcatgatgtctgtgaacgctcagccctgtcccctatttgtaggctg 384

                                     
Query: 185 ccatcatccttcacagaatttaaaac 210
           ||||||||||||||||||||||||||
Sbjct: 385 ccatcatccttcacagaatttaaaac 410


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 611
Length adjustment: 9
Effective length of query: 202
Effective length of database: 602
Effective search space:   121604
Effective search space used:   121604
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no164_g04.g1 MSMg01no164_g04.g1 CHROMAT_FILE:
MSMg01no164_g04.g1 PHD_FILE: MSMg01no164_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:13 2005
         (165 letters)



>mm_chr13_102003334_102003898
          Length = 565

 Score =  311 bits (161), Expect = 1e-89
 Identities = 164/165 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatttatccgtgctacacaatttatgctagctcattacctcctgctagactccaaggctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aatttatccgtgctacacaatttatgctagctcattacctcctgctagactccaaggctt 306

                                                                       
Query: 61  tgtaacggaaattggctctgatctccgagataggcattacatcatagtcttcttttagca 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 305 tgtaacggaaattggctctgatctccgagatgggcattacatcatagtcttcttttagca 246

                                                        
Query: 121 cattatgtcatccctgctgagacgcattatctatggttggctcag 165
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cattatgtcatccctgctgagacgcattatctatggttggctcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 565
Length adjustment: 8
Effective length of query: 157
Effective length of database: 557
Effective search space:    87449
Effective search space used:    87449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)