BAC Information

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BAC

Clone NameMSMg01-164H04
Chromosome13 (Build37)
Map Location 88,409,341 - 88,565,646
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC675707
Downstream geneLOC667230, EG435375, Edil3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164H04.T7 (MSMg01no164_h04.b1)MSMg01-164H04.TJ (MSMg01no164_h04.g1)
ACCAG362922AG362923
length725726
length of high quality
(start - end)
315 (51 - 365)254 (79 - 332)
definitionCHROMAT_FILE: MSMg01no164_h04.b1 PHD_FILE: MSMg01no164_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:18 2005CHROMAT_FILE: MSMg01no164_h04.g1 PHD_FILE: MSMg01no164_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,565,336 - 88,565,646)(88,409,341 - 88,409,590)
sequence
NCTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCCAGAAGAGTAAAAATCCATACTCAATGGTAAACATAAAT
AATTTGCAATACTTAATTTAAAAGATGTTTCCATTGTCATGAATAATATT
TTATTTTATTTGTGGCACTTGTTCCATTAGCCCTCATACATTACAAAGAT
AATGCCTTCCATTAGTGCTGACAGAGAATCAATTGTCTACGGAAATTATT
TCTTTTGCTGTTTTGTATTTAACTTACTTACTAGGAGGGTAAAGAATAAG
TAGCCCCTCCCCTGTTTTTGAGTGAAAATGATCACATGCACTGGATTTGT
TTATTTCTCAAAATATTGTCTTATCCCCTCCCCCCCCATTTATAATTTAT
ATGTCCACAATGAATATGTACACCCACACTAATATAAAATATTTATTTGT
AATTTTTGTGTTTTCATAATTTGTAAAATTAAAAATAATTCATAACTTAC
ATAGAATGTATATTTAGTCCATGAAATGCGTGCTTCCTCTTCCAGATACC
ATTCAGCCCATTTTCTCTCCAAGTGACTACTTAATGTTTTTCTGATCATA
TTCTTACAGTTATTCACTACAGGTACACTTGCATTCTTATTCCTCTCTTA
CCAACTGTTATCCCACTTACCTAGATGATCATCATGCCTCCTATTATTTT
ACCTTTACCGTGTCTAGAATCCCTC
NCCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATAATTCTTAATTTTGGTT
AATTATACCACTGGTGACTCCTGTACATTATTATCTCTTCCCCCACATAA
TTACTTAATCTCTGGTATATGATGTTTTCAATATATGAACTTATAGATAT
TATAATCACATAAACTAGTATAATTCATAATATGTATAATGTTTGTGTAA
GAATTTATTTTAATAAAGTATTCAAATAAATAGTATTTATTAAATTTTTA
ATTTATAGTTTTAACAAAATATGTTTAATATAACGAAATGAAACATTATA
AAAATAGACCCCTCAATGACGTTACATCAATTTCTATTTTCATAAGAATA
TTAAACTATCTCAACACACCACCCACCCAAAAGCCCCTGTTCACCTAGAA
ACCCCAGGGAAGGCCATTCCAACTCCCAGTCAACATACTTAAGAGTGAAC
TAACCTCCAAGTGTACTCTTTGTCCTCAGATCTATTTCCTATCCCTTAAA
TCCCGTAGATGCACCCTGATTTCACAAGATTACACATTGCTGCCTTCAAC
TCTTTACATCTTCTCATTATTTACAATCTCTTAACTCCAATTATTTCCCA
CATTGTTAGAATTCTCCTATTATAACTGATTTCCTTGTCTGTTTCCATAC
CTTCAAACTTCCTAGGCCTTCTTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_h04.b1 MSMg01no164_h04.b1 CHROMAT_FILE:
MSMg01no164_h04.b1 PHD_FILE: MSMg01no164_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:18 2005
         (315 letters)



>mm_chr13_88565132_88565846
          Length = 715

 Score =  586 bits (303), Expect = e-172
 Identities = 309/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccagaagagtaaaaatccatactcaatggtaaacataaataatttgcaatactt 64
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 515 gaattcccagaagagtaaaaatccatactcaatgataaacataaataatttgcaatactt 456

                                                                       
Query: 65  aatttaaaagatgtttccattgtcatgaataatattttattttatttgtggcacttgttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aatttaaaagatgtttccattgtcatgaataatattttattttatttgtggcacttgttc 396

                                                                       
Query: 125 cattagccctcatacattacaaagataatgccttccattagtgctgacagagaatcaatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 cattagccctcatacattacaaagataatgccttccattagtgctgacagagaatcaatt 336

                                                                       
Query: 185 gtctacggaaattatttcttttgctgttttgtatttaacttacttactaggagggtaaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 335 gtctacggaaattatttcttttgctgttttgtatttaacttacttactaggagggtaaaa 276

                                                                       
Query: 245 aataagtagcccctcccctgtttttgagtgaaaatgatcacatgcactggatttgtttat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aataagtagcccctcccctgtttttgagtgaaaatgatcacatgcactggatttgtttat 216

                      
Query: 305 ttctcaaaata 315
           |||||||||||
Sbjct: 215 ttctcaaaata 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no164_h04.g1 MSMg01no164_h04.g1 CHROMAT_FILE:
MSMg01no164_h04.g1 PHD_FILE: MSMg01no164_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:18 2005
         (254 letters)



>mm_chr13_88409141_88409794
          Length = 654

 Score =  468 bits (242), Expect = e-136
 Identities = 248/250 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttataattcttaattttggttaattataccactggtgactcctgtacattattatctct 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 tttataattcttaattttggttaattataccactgctgactcctgtacattattatctct 260

                                                                       
Query: 61  tcccccacataattacttaatctctggtatatgatgttttcaatatatgaacttatagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcccccacataattacttaatctctggtatatgatgttttcaatatatgaacttatagat 320

                                                                       
Query: 121 attataatcacataaactagtataattcataatatgtataatgtttgtgtaagaatttat 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 attataatcacataaactagtataattcataatatgtgtaatgtttgtgtaagaatttat 380

                                                                       
Query: 181 tttaataaagtattcaaataaatagtatttattaaatttttaatttatagttttaacaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttaataaagtattcaaataaatagtatttattaaatttttaatttatagttttaacaaa 440

                     
Query: 241 atatgtttaa 250
           ||||||||||
Sbjct: 441 atatgtttaa 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)