BAC Information

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BAC

Clone NameMSMg01-164J20
Chromosome13 (Build37)
Map Location 87,717,938 - 87,718,282
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC675707, LOC667230, EG435375
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164J20.T7 (MSMg01no164_j20.b1)MSMg01-164J20.TJ (MSMg01no164_j20.g1)
ACCAG363037AG363038
length749741
length of high quality
(start - end)
---346 (72 - 417)
definitionCHROMAT_FILE: MSMg01no164_j20.b1 PHD_FILE: MSMg01no164_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:31 2005CHROMAT_FILE: MSMg01no164_j20.g1 PHD_FILE: MSMg01no164_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGATG
CTACAGCACTTGATGTGTGCTAGGCGCTGACCCCTGTGGAACGTTGAGCG
ACCTCCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTATCTACGTCACCGCCCCACCGGTCTGATA
TTGTTGAAGGAGACTGTGTCACACCCCGCAGACACCCGTCAAATTCTCCG
TGGTGGCTCATCTACATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCTTCCACTCA
TCTATTATCAACGCGATGTACGATGCCGGTACGAACTTCTTGCGATCCTA
GAGCCATAAACTGCTGTCTCGTTGCTAAAAGTCACGATGCTGAGTGATN
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGTTGACAAAAATAACAAGACATCTTTTA
AATCAAGAGAAAGAGATAAATGTATGTCAGGACAGAAAATAAGCCCCCAT
CTAAATGCAAGACTATTTAAGGAATTTATTTTCTTAAGTCTAATTAGAAT
GATGGGAGAAAGAGAAAAAAAGTTTTCCAGGTGCAATTATTTCCCTGAAA
AAAAAAAGCATTAAAATTTATTAATGCAGATCTTGTACCAAGAGAAGAAT
AACAAAGTGTAACATAATGGAAATAAATTTTTCAGCTTAAAAGCAAAGTA
GTAGACTCTGATACTGTCTCTTTAGAAAGTCATGCTGTAATTTCTGATAA
AATACAAAAAAAGAGATACCCCCATACATGTATTCAGTAGTCTTTTGAAA
TATTAGTGAATATGGAATACATTACATTATTACCACACAAAAGAGAGCAA
ATAGAATTCTTGAATATGAAAAGTGTACAGGATTTATGCCTGAAATAATG
TCTCACAATAAGTACACATACACTCCCACATACATGTATGCACACATATA
TACTTTCAGAGAGAAAATACATGATATTTGGCTTATATCTCAACCCAGCA
ATACCACTGTTTCTCTCCCACACCCCAAGGTTACAACTTGAGTCACAATG
AAGCAGATACTTGGAAGAAGACACCTTGAAAAGATCTCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_j20.g1 MSMg01no164_j20.g1 CHROMAT_FILE:
MSMg01no164_j20.g1 PHD_FILE: MSMg01no164_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:31 2005
         (346 letters)



>mm_chr13_87717738_87718482
          Length = 745

 Score =  623 bits (322), Expect = 0.0
 Identities = 340/346 (98%), Gaps = 1/346 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttgacaaaaataacaagacatcttttaaatcaagagaaagagataaatgtatgtcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 545 tgttgacaaaaataacaagacatcttttaaatcaagagaaagagataaatgcatgtcagg 486

                                                                       
Query: 61  acagaaaataagcccccatctaaatgcaagactatttaaggaatttattttcttaagtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 acagaaaataagcccccatctaaatgcaagactatttaaggaatttattttcttaagtct 426

                                                                       
Query: 121 aattagaatgatgggagaaagagaaaaaaagttttccaggtgcaattatttccctgaaaa 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 425 aattagaatgatgggagaaagagaaaaaaagttttccagctgcaattatttccctgaaaa 366

                                                                       
Query: 181 aaaaaagcattaaaatttattaatgcagatcttgtaccaagagaagaataacaaagtgta 240
           ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 365 aaaaa-gtattaaaatttattaatgcagatcttgtaccaagagaagaataacaaaatgta 307

                                                                       
Query: 241 acataatggaaataaatttttcagcttaaaagcaaagtagtagactctgatactgtctct 300
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 306 acataatggaaataaatttttcagcttaaaagcaaagtagaagactctgatactgtctct 247

                                                         
Query: 301 ttagaaagtcatgctgtaatttctgataaaatacaaaaaaagagat 346
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ttagaaagtcatgctgtaatttctgataaaatacaaaaaaagagat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 745
Length adjustment: 9
Effective length of query: 337
Effective length of database: 736
Effective search space:   248032
Effective search space used:   248032
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)