Query= MSMg01no165_f03.b1 MSMg01no165_f03.b1 CHROMAT_FILE:
MSMg01no165_f03.b1 PHD_FILE: MSMg01no165_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:26 2005
(672 letters)
>mm_chr13_49773433_49774503
Length = 1071
Score = 1011 bits (523), Expect = 0.0
Identities = 535/539 (99%), Gaps = 1/539 (0%)
Strand = Plus / Minus
Query: 5 gaattccacagaaatactcatcagaatgatacattatcatccaggtttgaatatttttct 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaattccacagaaatagtcatcagaatgatacattatcatccaggtttgaatatttttct 479
Query: 65 actatgaaattatcttctttgtcagtgaatgcttttctgggttaatttctttcaagggct 124
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 actatgaaa-tatcttctttgtcagtgaatgcttttctgggttaatttctttcaagggct 420
Query: 125 ggtgagcagtctgcacattcaattccaaaaccaaagctgacaatggttaatttgctttca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ggtgagcagtctgcacattcaattccaaaaccaaagctgacaatggttaatttgctttca 360
Query: 185 ccttccttttggcttctttatgtttcttccgacattcctaaaaaaccataaaataagaag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ccttccttttggcttctttatgtttcttccgacattcctaaaaaaccataaaataagaag 300
Query: 245 cttttatcaacaataaacacaaatttcgcacagtcaacaaagtatacttaaagtcgtaga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 cttttatcaacaataaacacaaatttcgcacagtcaacaaagtatacttaaagtcgtaga 240
Query: 305 aacccattctacaaacacttctgggatgcaccgactatagtcagaccttggctaccttgt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 aacccattctacaaacacttctgggatgcaccgactatagtcagaccttggctaccttgt 180
Query: 365 gggttcttttcctcttccacccttctccctttcacccagcctcctcttccaccctttcga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 gggttcttttcctcttccacccttctccctttcacccagcctcctcttccaccctttcga 120
Query: 425 ccccctaacactacataggagagaaaaaaggatagaaggggagatggttgatgttacggt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 ccccctaacactacataggagagaaaaaaggatagaaggggagatggttgatgttacggt 60
Query: 485 tagactacttcctcctgattggggagtcaagttccttgaggcaactttgatctttgcta 543
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 59 tagactacttcctgctgattggggagtcaagttccttgaggcaactttgaactttgcta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1071
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1061
Effective search space: 702382
Effective search space used: 702382
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no165_f03.g1 MSMg01no165_f03.g1 CHROMAT_FILE:
MSMg01no165_f03.g1 PHD_FILE: MSMg01no165_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:26 2005
(640 letters)
>mm_chr13_49624736_49625775
Length = 1040
Score = 1214 bits (628), Expect = 0.0
Identities = 637/640 (99%)
Strand = Plus / Plus
Query: 1 tttcaagaacagaggaatctatattgagtgaaaagggctggaaagaagcccttgtagact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcaagaacagaggaatctatattgagtgaaaagggctggaaagaagcccttgtagact 260
Query: 61 taaggaacgcttatgaaaaaaggatagagctcaccacattcccaggactttccagtgcat 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 taaggaacgcttatgaaaaaaggatagagctcaccacattcccagggctttccagtgcat 320
Query: 121 gaacactttagagccctcaatttcactctaatccctttatctcgccccaagtctttgatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaacactttagagccctcaatttcactctaatccctttatctcgccccaagtctttgatc 380
Query: 181 tgccagataataaatctaataagaatgaaaaatgaaggcaacccccactctcagcccaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgccagataataaatctaataagaatgaaaaatgaaggcaacccccactctcagcccaaa 440
Query: 241 tctcgtactggaaccaaagactcctggattttatctgattcagcaattcgaactttgttt 300
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 441 tctcgtactggaaccaaagactcctggatttcatctgattcagcaatttgaactttgttt 500
Query: 301 ctcgatttcccaaaggatctgagttttccaacctggactcaaacccatagctaaggaacg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcgatttcccaaaggatctgagttttccaacctggactcaaacccatagctaaggaacg 560
Query: 361 gtgtaaatgctggtaagagtatgagactgagagccagacagacccaggctggctagaacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgtaaatgctggtaagagtatgagactgagagccagacagacccaggctggctagaacc 620
Query: 421 taggtctgttcaggatcattaggacgaccagtcagtctcctgaggttccttatgctgctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taggtctgttcaggatcattaggacgaccagtcagtctcctgaggttccttatgctgctc 680
Query: 481 actttctttttgttgcagaaatcttgaatctattgacctgtcctataacaagctctacca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actttctttttgttgcagaaatcttgaatctattgacctgtcctataacaagctctacca 740
Query: 541 cgtcccctcctacctacccaaatctcttctgcaccttgtcctaattgggaaccaaatcga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cgtcccctcctacctacccaaatctcttctgcaccttgtcctaattgggaaccaaatcga 800
Query: 601 tcggatccctggctatgtgtttggccacatgcaaccaggc 640
||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tcggatccctggctatgtgtttggccacatgcaaccaggc 840
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space: 648900
Effective search space used: 648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
