BAC Information

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BAC

Clone NameMSMg01-165J06
Chromosome13 (Build37)
Map Location 26,846,463 - 26,847,167
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666221, LOC100042180, LOC100042191
Downstream geneHdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165J06.T7 (MSMg01no165_j06.b1)MSMg01-165J06.TJ (MSMg01no165_j06.g1)
ACCAG363691AG363692
length732729
length of high quality
(start - end)		693 (40 - 732)661 (69 - 729)
definitionCHROMAT_FILE: MSMg01no165_j06.b1 PHD_FILE: MSMg01no165_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:47 2005CHROMAT_FILE: MSMg01no165_j06.g1 PHD_FILE: MSMg01no165_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AGAGACAGCACTCTCAAAGGTTAAAGAGGCTATATTTTTAAAAGGAAGTT
TCATTTTATCCTAAAATCTCTTTTTTTCCCAAAGTGTATGGTTTCATTCA
AACCAAGATTTCATCTTTTATATGATGTATTGACAAGTTAGTTATATTTT
ACAAAATCCTAGGAGTATGCTTCTCCTCTCATTTAAAGGGTCCATAAAAT
ATAGTATTAGAACAACATATTTGATTTGTAGTTTTAGATCATCTCACAAA
TCTGGTCTTGCCTCAAAAAAAAAAAAAACTGGATTAGAAACATATTTAAA
AAGTTTACAAAGAAAACTGATTCAAAACTGCTAACAAATTGAATCTAGAA
ATAGTTCTATATAATTCAAAGAAAATATTTTATCTAAGTAAATATTGAAA
AACAAAAATTTTTAGAGTCTTTCCTGCTTTTTACACACACACACACACAC
ACACACACACACACACACACACACACACAGGCTCATGCACACACGCACAA
ACACCATTCTCTGCCCATACCCTAGTGTGAACCACTTCATTTGCTTTCTG
GATCAGCAGCTAAAAATCATATATTTTGTAGAACTTCAAATATAGGCATG
TAATACTGCTACTAAACTATACCTTCTACATGTCTATCCTCCCTGTGTCT
ATACCCTCAGAGTGTTGATATGTACTCCTAAC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATGTGCATTCCAGATGAATCACATAGACCTAA
AAGATCTTTGGACACGATCCCTTGCCAGAGCAGCCATGTTGCTAGATTAA
AATTCCTCTAGACTACTGTTGTTTTATCAACTGAATACCCATACATTAGA
GCTGCTTTCAACCTTCATCAGAAAAACATCATTTTTGCTGGGGCAACAAT
CAGTGCAGAGAGTTATAACTGGTTGGTATGCTCAGAATAAGTAACTGTTG
AGCATTAAGTCCTAATTGACATAACTCTATTAGCCATGCCCTAAGACTTG
GGGAACACTATGACAGGAGTGGTAAAATCCAGAGGATGAGGATGAGTGCC
AATAAAGAAAGTCTTATGTGCATTACTTTCCTGCTCTTTCAATCATAAAC
TCCCAATAGCTTTAGTTACCTGCCCAGGGTCAGCACAGAATCAAGGTTCT
CCAATTTCTTACATGAATAGAGGAAAGGCTCCTGAGGCTCTCTACCCCTG
ACTGCGAGCCTGTTGACATTAGATGGCTTCTGGGAAGGGAGGTTACTTTT
CTTTGGGGATATCACCTCTGGTGGGATATCTATACTACTGTGGATCACCC
TACATCCACCTACAAATGGGAAGAACTTATTGCAACTTAATGCACTGAAA
ATGAGGGAAAATGAAGAAGACATTGAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_j06.b1 MSMg01no165_j06.b1 CHROMAT_FILE:
MSMg01no165_j06.b1 PHD_FILE: MSMg01no165_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:47 2005
         (693 letters)



>mm_chr13_26846300_26847393
          Length = 1094

 Score = 1089 bits (563), Expect = 0.0
 Identities = 657/731 (89%), Gaps = 67/731 (9%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccagagacagcactctcaaaggttaaagaggctatatttttaaaaggaagtttc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 ggaattccagagacagcactctcaaaggttaaagaggctatatttttaaaaggaagtttc 223

                                                                       
Query: 64  attttatcctaaaatctcttttttt-cccaaagtgtatggtttcattcaaaccaagattt 122
           ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 224 attttatcctaaaatctcttttttttcccaaagtgtatggtttcattcagaccaagattt 283

                                                                       
Query: 123 catcttttatatgatgtattgacaagttagttatattttacaaaatcctaggagtatgct 182
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 284 catcttttatatgatgtattgacaagttagttatattttacaaaatcttaggagtatgct 343

                                                                       
Query: 183 tctcctctcatttaaagggtccataaaatatagtattagaacaacatatttgatttgtag 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tctcctctcatttaaagggtccataaaatatagtattagaacaacatatttgatttgtag 403

                                                                       
Query: 243 ttttagatcatctcacaaatctggtcttgcctcaaaaaaaaaaaaaa------------- 289
           |||||||||||||||||| ||||||||||||||||||||||||||||             
Sbjct: 404 ttttagatcatctcacaagtctggtcttgcctcaaaaaaaaaaaaaaaaacaaaaaaaca 463

                                                                       
Query: 290 ---------------------------ctggattagaaacatatttaaaaagtttacaaa 322
                                      ||||| |||||||||||||||||||||||||||
Sbjct: 464 aaaaaacaaaaaaaaacaaaaaaaaaactggactagaaacatatttaaaaagtttacaaa 523

                                                                       
Query: 323 gaaaactgattcaaaactgctaacaaattgaatctagaaatagttctatataattcaaag 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gaaaactgattcaaaactgctaacaaattgaatctagaaatagttctatataattcaaag 583

                                                                       
Query: 383 aaaatattttatctaagtaaatattgaaaaacaaaaatttttagagtctttcctgctttt 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 aaaatattttatctaagtaaatattgaaaaacaaaaatttttagagtctttcctgctttt 643

                                                                       
Query: 443 tacacacacacacacacacacacacacacacacacacacacacacacaggctcatgcaca 502
           || |||||||||||||||||||                          ||||||||||||
Sbjct: 644 tatacacacacacacacacaca--------------------------ggctcatgcaca 677

                                                                       
Query: 503 cacgcacaaacaccattctctgcccataccctagtgtgaaccacttcatttgctttctgg 562
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 cacgcacaaacaccattctctgcccataccctagtgtgaaccacttcatttgctttctgg 737

                                                                       
Query: 563 atcagcagctaaaaatcatatattttgtagaacttcaaatataggcatgtaatactgcta 622
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 738 atcagcagctaaaaatcatacattttgtagaacttcaaatataggcatgtaatactgcta 797

                                                                       
Query: 623 ctaaactataccttctacatgtctatcctccctgtgtctataccctcagagtgttgatat 682
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ctaaactataccttctacaggtctatcctccctgtgtctataccctcagagtgttgatat 857

                      
Query: 683 gtactcctaac 693
           |||||||||||
Sbjct: 858 gtactcctaac 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1094
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1084
Effective search space:   740372
Effective search space used:   740372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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