Query= MSMg01no165_p11.b1 MSMg01no165_p11.b1 CHROMAT_FILE:
MSMg01no165_p11.b1 PHD_FILE: MSMg01no165_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:20 2005
(667 letters)
>mm_chr13_110724345_110725410
Length = 1066
Score = 1189 bits (615), Expect = 0.0
Identities = 651/663 (98%), Gaps = 1/663 (0%)
Strand = Plus / Minus
Query: 5 gaattcatttagaagcttggaaacaacttgttctactacatggactccagtttcaacatg 64
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 866 gaattcatttagaagtttggaaacaacttgttctactatatggactccagtttcaacatg 807
Query: 65 tattttaaaacgttagaaacttcacatgcacacatatcaaaaatagcagcgaatgaactc 124
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 806 tattttaaaacgttagaaacttcacatgcacacatatcaaaaatagcaacgaatgaactc 747
Query: 125 gggggctaaataactgtgatcagccgcactgtgggagttgaagccacacctcagaatggc 184
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 746 gggggctaaataactgtgatcagccgcactgtgggagttgaatccacacctcagaatggc 687
Query: 185 cagatccttctgttactgtttcctgggcaataagaaggaaatgcttatgatgcagccgag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 cagatccttctgttactgtttcctgggcaataagaaggaaatgcttatgatgcagccgag 627
Query: 245 tctacagggacccacagacaaaccacaacatcatataatgacaggcacatatgctaattt 304
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 626 tctacagggacccacagacaaaccacaacatcatataacgacaggcacatatgctaattt 567
Query: 305 ttacagtaaaagctatagacataagatgtctttgtacactcatttctgttaaaggccttc 364
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ttac-gtaaaagctatagacataagatgtctttgtacactcatttctgttaaaggccttc 508
Query: 365 gctcacccttgcacaacataggctcaacaaacatcactataggaatttgcttcttcatgt 424
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gctcatccttgtacaacataggctcaacaaacatcactataggaatttgcttcttcatgt 448
Query: 425 acagtaatttttgttttaaaagtgcattcccatggctaggagggattcaaatgattaact 484
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 447 acagtaatttttgttttaaaggtgcattcccatggctaggagggattcaaatgattaact 388
Query: 485 ttcacttatggcattttctgtctgcagttaaggttagaagggttgtctcccaaaaccaca 544
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttcagttatggcattttctgtctgcagttaaggttagaagggttgtctcccaaaaccaca 328
Query: 545 cccactcttgactacagcagcaagcttcccttatgaactgcatctccatcagtcaaggta 604
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 327 cccactcttgactacagcagcaagcttcccttaggaactgcatctccatcagtcaagcta 268
Query: 605 ggccaggtaatcaccagacatggtagccttcatggtaggggttagggcccatttataatt 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ggccaggtaatcaccagacatggtagccttcatggtaggggttagggcccatttataatt 208
Query: 665 tat 667
|||
Sbjct: 207 tat 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1066
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1056
Effective search space: 693792
Effective search space used: 693792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no165_p11.g1 MSMg01no165_p11.g1 CHROMAT_FILE:
MSMg01no165_p11.g1 PHD_FILE: MSMg01no165_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:20 2005
(659 letters)
>mm_chr13_110550519_110551577
Length = 1059
Score = 1207 bits (624), Expect = 0.0
Identities = 651/660 (98%), Gaps = 1/660 (0%)
Strand = Plus / Plus
Query: 1 agtacaatttacttgacaacatttttgtttttgcttaaattcttcaatagccaaaagata 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 agtacaatttacttgacaacatttttgttgttgcttaaattcttcaatagccaaaagata 260
Query: 61 ggaattatttaaaataagtgtataaaatgtgcatactaaaccccccaaaattcagtttaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaattatttaaaataagtgtataaaatgtgcatactaaaccccccaaaattcagtttaa 320
Query: 121 tatcttaccagtaaaacaaagtttaaaaactgacctacagttgaggtatggtcgtaagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatcttaccagtaaaacaaagtttaaaaactgacctacagttgaggtatggtcgtaagca 380
Query: 181 tctttagttccagcaacccaggggtggggcaggcagatctctaaattggaggcgagtaga 240
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctttagtcccagcaacccaggagtggggcaggcagatctctaaattggaggcgagtaga 440
Query: 241 gtctatatagtgaatgctaagccagccagggccatacagtgagccccatctcaaagcaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtctatatagtgaatgctaagccagccagggccatacagtgagccccatctcaaagcaaa 500
Query: 301 acaactctttctacagaaaaaatttcattcataaattaatgccctcctgaatgggctatt 360
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 501 acaactctttctacagaaaaaatttcattcataaattaatgtcttcctgaatgggctatt 560
Query: 361 tttt-caaatgattataaactatgaattacctgaaaaacttttcctacagaaattaacta 419
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 561 tttttcaaatgattataaactatgaattacctgaaaaacttttcctacggaaatgaacta 620
Query: 420 ttaaattactacttctaccacccaatgtccagacgctgttgggtaatcacaaaagtgttt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttaaattactacttctaccacccaatgtccagacgctgttgggtaatcacaaaagtgttt 680
Query: 480 tgtattaaagatctcaaaattctgaggctaaaaaatcttcatctagaatagggagtagcc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtattaaagatctcaaaattctgaggctaaaaaatcttcatctagaatagggagtagcc 740
Query: 540 ggctgaggcaggagttgtatttaaatactttattgacatgtttgctcttcacatcttaga 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggctgaggcaggagttgtatttaaatactttattgacatgtttgctcttcacatcttaga 800
Query: 600 acacaaattaagttgtcgtgatttcacaactggatcgttaatttttttatttctgcatca 659
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 801 acacaaattaagttgtcgtgatttcacgactggatcgttaatttttttatttctgcatca 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
